Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_G10
         (475 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)              91   6e-19
SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)               91   6e-19
SB_56| Best HMM Match : Actin (HMM E-Value=0)                          91   6e-19
SB_56628| Best HMM Match : Actin (HMM E-Value=0)                       91   6e-19
SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)              89   1e-18
SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)               89   1e-18
SB_13344| Best HMM Match : Actin (HMM E-Value=1.5e-07)                 81   5e-16
SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10)                 44   6e-05
SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.49 
SB_50228| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.0  

>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 376

 Score = 90.6 bits (215), Expect = 6e-19
 Identities = 40/40 (100%), Positives = 40/40 (100%)
 Frame = +1

Query: 10  KYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 129
           KYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF
Sbjct: 337 KYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376


>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 375

 Score = 90.6 bits (215), Expect = 6e-19
 Identities = 40/40 (100%), Positives = 40/40 (100%)
 Frame = +1

Query: 10  KYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 129
           KYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF
Sbjct: 336 KYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375


>SB_56| Best HMM Match : Actin (HMM E-Value=0)
          Length = 375

 Score = 90.6 bits (215), Expect = 6e-19
 Identities = 40/40 (100%), Positives = 40/40 (100%)
 Frame = +1

Query: 10  KYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 129
           KYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF
Sbjct: 336 KYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375


>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
          Length = 376

 Score = 90.6 bits (215), Expect = 6e-19
 Identities = 40/40 (100%), Positives = 40/40 (100%)
 Frame = +1

Query: 10  KYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 129
           KYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF
Sbjct: 337 KYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376


>SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 338

 Score = 89.4 bits (212), Expect = 1e-18
 Identities = 39/40 (97%), Positives = 40/40 (100%)
 Frame = +1

Query: 10  KYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 129
           KYSVWIGGSILASLSTFQQMWISKQEYDESGP+IVHRKCF
Sbjct: 299 KYSVWIGGSILASLSTFQQMWISKQEYDESGPAIVHRKCF 338


>SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 349

 Score = 89.4 bits (212), Expect = 1e-18
 Identities = 39/40 (97%), Positives = 40/40 (100%)
 Frame = +1

Query: 10  KYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 129
           KYSVWIGGSILASLSTFQQMWISKQEYDESGP+IVHRKCF
Sbjct: 310 KYSVWIGGSILASLSTFQQMWISKQEYDESGPAIVHRKCF 349


>SB_13344| Best HMM Match : Actin (HMM E-Value=1.5e-07)
          Length = 149

 Score = 81.0 bits (191), Expect = 5e-16
 Identities = 35/40 (87%), Positives = 37/40 (92%)
 Frame = +1

Query: 10  KYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 129
           KYSVWIGGSILASLSTFQQMWI+K+EY E GP IVHRKCF
Sbjct: 110 KYSVWIGGSILASLSTFQQMWIAKEEYHEYGPPIVHRKCF 149


>SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10)
          Length = 543

 Score = 44.0 bits (99), Expect = 6e-05
 Identities = 19/40 (47%), Positives = 25/40 (62%)
 Frame = +1

Query: 10  KYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 129
           +Y+VW GGS+LAS   F  +  +K +YDE GPSI     F
Sbjct: 301 RYAVWFGGSMLASTPEFYSVCHTKADYDEHGPSICRHNPF 340


>SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 411

 Score = 31.1 bits (67), Expect = 0.49
 Identities = 12/34 (35%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
 Frame = +1

Query: 4   RGKYSVWIGGSILASLSTFQQ-MWISKQEYDESG 102
           R K+ V++GG++LA +   +   W++++EY+E G
Sbjct: 366 RRKHMVFMGGAVLADIMKDKDSFWMTRKEYEEKG 399


>SB_50228| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 135

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 6/36 (16%)
 Frame = +2

Query: 119 GSASKRCAHRCLQQPAV------RSISRPAAQLRLV 208
           G  S RC+HRC+ + AV      R ++R A +LR +
Sbjct: 28  GFCSHRCSHRCMARAAVAMKTRARELAREAKRLRFL 63


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,164,765
Number of Sequences: 59808
Number of extensions: 204039
Number of successful extensions: 416
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 387
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 416
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 994359969
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)