Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_G10
(475 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z83241-1|CAB05817.1| 375|Caenorhabditis elegans Hypothetical pr... 91 5e-19
Z81584-6|CAB04678.1| 376|Caenorhabditis elegans Hypothetical pr... 91 5e-19
Z81584-5|CAB04675.1| 376|Caenorhabditis elegans Hypothetical pr... 91 5e-19
Z81584-4|CAB04676.1| 376|Caenorhabditis elegans Hypothetical pr... 91 5e-19
X16799-1|CAA34720.1| 376|Caenorhabditis elegans actin protein. 91 5e-19
X16798-1|CAA34719.1| 375|Caenorhabditis elegans actin protein. 91 5e-19
X16797-1|CAA34718.1| 376|Caenorhabditis elegans actin protein. 91 5e-19
X16796-1|CAA34717.1| 376|Caenorhabditis elegans actin protein. 91 5e-19
U64601-7|AAK77622.1| 332|Caenorhabditis elegans Actin protein 4... 91 5e-19
U64601-6|AAT92068.1| 362|Caenorhabditis elegans Actin protein 4... 91 5e-19
U64601-5|AAB04575.1| 376|Caenorhabditis elegans Actin protein 4... 91 5e-19
AC006833-3|AAF60947.2| 436|Caenorhabditis elegans Hypothetical ... 72 2e-13
AL132949-19|CAB70110.2| 374|Caenorhabditis elegans Hypothetical... 54 4e-08
AC024200-9|AAF36012.1| 425|Caenorhabditis elegans Arp2/3 comple... 44 4e-05
Z71181-1|CAA94894.1| 395|Caenorhabditis elegans Hypothetical pr... 36 0.015
Z37139-8|CAA85487.1| 376|Caenorhabditis elegans Hypothetical pr... 29 1.3
AL032654-9|CAA21720.1| 404|Caenorhabditis elegans Hypothetical ... 27 9.1
>Z83241-1|CAB05817.1| 375|Caenorhabditis elegans Hypothetical
protein T25C8.2 protein.
Length = 375
Score = 90.6 bits (215), Expect = 5e-19
Identities = 40/40 (100%), Positives = 40/40 (100%)
Frame = +1
Query: 10 KYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 129
KYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF
Sbjct: 336 KYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375
>Z81584-6|CAB04678.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.6 protein.
Length = 376
Score = 90.6 bits (215), Expect = 5e-19
Identities = 40/40 (100%), Positives = 40/40 (100%)
Frame = +1
Query: 10 KYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 129
KYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF
Sbjct: 337 KYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
>Z81584-5|CAB04675.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.5 protein.
Length = 376
Score = 90.6 bits (215), Expect = 5e-19
Identities = 40/40 (100%), Positives = 40/40 (100%)
Frame = +1
Query: 10 KYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 129
KYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF
Sbjct: 337 KYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
>Z81584-4|CAB04676.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.4 protein.
Length = 376
Score = 90.6 bits (215), Expect = 5e-19
Identities = 40/40 (100%), Positives = 40/40 (100%)
Frame = +1
Query: 10 KYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 129
KYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF
Sbjct: 337 KYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
>X16799-1|CAA34720.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 90.6 bits (215), Expect = 5e-19
Identities = 40/40 (100%), Positives = 40/40 (100%)
Frame = +1
Query: 10 KYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 129
KYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF
Sbjct: 337 KYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
>X16798-1|CAA34719.1| 375|Caenorhabditis elegans actin protein.
Length = 375
Score = 90.6 bits (215), Expect = 5e-19
Identities = 40/40 (100%), Positives = 40/40 (100%)
Frame = +1
Query: 10 KYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 129
KYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF
Sbjct: 336 KYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375
>X16797-1|CAA34718.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 90.6 bits (215), Expect = 5e-19
Identities = 40/40 (100%), Positives = 40/40 (100%)
Frame = +1
Query: 10 KYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 129
KYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF
Sbjct: 337 KYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
>X16796-1|CAA34717.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 90.6 bits (215), Expect = 5e-19
Identities = 40/40 (100%), Positives = 40/40 (100%)
Frame = +1
Query: 10 KYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 129
KYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF
Sbjct: 337 KYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
>U64601-7|AAK77622.1| 332|Caenorhabditis elegans Actin protein 4,
isoform b protein.
Length = 332
Score = 90.6 bits (215), Expect = 5e-19
Identities = 40/40 (100%), Positives = 40/40 (100%)
Frame = +1
Query: 10 KYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 129
KYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF
Sbjct: 293 KYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 332
>U64601-6|AAT92068.1| 362|Caenorhabditis elegans Actin protein 4,
isoform c protein.
Length = 362
Score = 90.6 bits (215), Expect = 5e-19
Identities = 40/40 (100%), Positives = 40/40 (100%)
Frame = +1
Query: 10 KYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 129
KYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF
Sbjct: 323 KYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 362
>U64601-5|AAB04575.1| 376|Caenorhabditis elegans Actin protein 4,
isoform a protein.
Length = 376
Score = 90.6 bits (215), Expect = 5e-19
Identities = 40/40 (100%), Positives = 40/40 (100%)
Frame = +1
Query: 10 KYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 129
KYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF
Sbjct: 337 KYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
>AC006833-3|AAF60947.2| 436|Caenorhabditis elegans Hypothetical
protein ZK616.4 protein.
Length = 436
Score = 72.1 bits (169), Expect = 2e-13
Identities = 31/42 (73%), Positives = 33/42 (78%)
Frame = +1
Query: 1 ARGKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKC 126
A KY WIGGSIL SL TFQQMW+SK EYDESG SIV +KC
Sbjct: 394 AERKYGAWIGGSILGSLGTFQQMWVSKAEYDESGKSIVEKKC 435
>AL132949-19|CAB70110.2| 374|Caenorhabditis elegans Hypothetical
protein Y53F4B.22 protein.
Length = 374
Score = 54.4 bits (125), Expect = 4e-08
Identities = 20/36 (55%), Positives = 30/36 (83%)
Frame = +1
Query: 22 WIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 129
WIGGSI+ASL TF++MW+ K+EY++ G S +H++ F
Sbjct: 339 WIGGSIVASLDTFRKMWLGKKEYEDMGASAMHKRFF 374
>AC024200-9|AAF36012.1| 425|Caenorhabditis elegans Arp2/3 complex
component protein 1 protein.
Length = 425
Score = 44.4 bits (100), Expect = 4e-05
Identities = 20/34 (58%), Positives = 25/34 (73%)
Frame = +1
Query: 10 KYSVWIGGSILASLSTFQQMWISKQEYDESGPSI 111
+Y+VW GGS+LAS S F Q+ +K EY E GPSI
Sbjct: 381 RYAVWFGGSMLASTSEFYQVSHTKAEYMERGPSI 414
>Z71181-1|CAA94894.1| 395|Caenorhabditis elegans Hypothetical
protein K07C5.1 protein.
Length = 395
Score = 35.9 bits (79), Expect = 0.015
Identities = 15/33 (45%), Positives = 24/33 (72%), Gaps = 2/33 (6%)
Frame = +1
Query: 10 KYSVWIGGSILASL--STFQQMWISKQEYDESG 102
K+ V++GG++LA+L Q W+SK+EY+E G
Sbjct: 351 KHMVFLGGAVLANLMKDRDQDFWVSKKEYEEGG 383
>Z37139-8|CAA85487.1| 376|Caenorhabditis elegans Hypothetical
protein C14B1.4 protein.
Length = 376
Score = 29.5 bits (63), Expect = 1.3
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = -3
Query: 179 RSTEPRAAGGSDAHSA*KHFLCTIEGPDSSYSCFEIHICWK 57
++ P AAG S + SA +CT+EG S S + C K
Sbjct: 60 QTPNPNAAGASASGSANYKLMCTLEGHTKSISSAKFSPCGK 100
>AL032654-9|CAA21720.1| 404|Caenorhabditis elegans Hypothetical
protein Y52B11A.9 protein.
Length = 404
Score = 26.6 bits (56), Expect = 9.1
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = +1
Query: 31 GSILASLSTFQQMWISKQEYDESGPSIVHRKCF*ALCASLPPAAR 165
G A +S F + K++ DE GPS RK S PAA+
Sbjct: 221 GVASAKISIFDMPKVKKEDPDEPGPSQPSRKSGKKRSRSRSPAAK 265
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,131,480
Number of Sequences: 27780
Number of extensions: 138138
Number of successful extensions: 319
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 318
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 319
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 860942358
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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