Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_G10
(475 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g09810.1 68418.m01135 actin 7 (ACT7) / actin 2 identical to S... 89 2e-18
At5g59370.1 68418.m07440 actin 4 (ACT4) identical to SP|P53494 A... 87 6e-18
At3g53750.1 68416.m05938 actin 3 (ACT3) identical to SP|P53493 A... 87 6e-18
At3g46520.1 68416.m05050 actin 12 (ACT12) identical to SP|P53497... 87 6e-18
At3g12110.1 68416.m01507 actin 11 (ACT11) identical to SP|P53496... 87 6e-18
At2g37620.1 68415.m04615 actin 1 (ACT1) identical to SP|P10671 A... 87 6e-18
At3g18780.2 68416.m02386 actin 2 (ACT2) identical to SP|Q96292 A... 85 2e-17
At1g49240.1 68414.m05520 actin 8 (ACT8) identical to SP|Q96293 A... 85 2e-17
At2g42170.1 68415.m05219 actin, putative similar to actin 2 [Ara... 78 3e-15
At2g42100.1 68415.m05205 actin, putative very strong similarity ... 74 6e-14
At2g42090.1 68415.m05204 actin, putative similar to SP|P53496 Ac... 70 7e-13
At1g18450.1 68414.m02302 actin-related protein 4 (ARP4) neary id... 66 1e-11
At3g60830.1 68416.m06805 actin-related protein 7 (ARP7) identica... 59 1e-09
At3g18780.1 68416.m02385 actin 2 (ACT2) identical to SP|Q96292 A... 44 5e-05
At3g33520.1 68416.m04291 actin-related protein 6 (ARP6) nearly i... 39 0.002
At1g13180.1 68414.m01528 actin-related protein 3 (ARP3) identica... 36 0.011
At5g13820.1 68418.m01615 telomeric DNA-binding protein 1 (TBP1) ... 27 6.5
>At5g09810.1 68418.m01135 actin 7 (ACT7) / actin 2 identical to
SP|P53492 Actin 7 (Actin-2) {Arabidopsis thaliana}
Length = 377
Score = 88.6 bits (210), Expect = 2e-18
Identities = 39/40 (97%), Positives = 39/40 (97%)
Frame = +1
Query: 10 KYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 129
KYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct: 338 KYSVWIGGSILASLSTFQQMWISKSEYDESGPSIVHRKCF 377
>At5g59370.1 68418.m07440 actin 4 (ACT4) identical to SP|P53494
Actin 4 {Arabidopsis thaliana}
Length = 377
Score = 87.0 bits (206), Expect = 6e-18
Identities = 38/40 (95%), Positives = 39/40 (97%)
Frame = +1
Query: 10 KYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 129
KYSVWIGGSILASLSTFQQMWI+K EYDESGPSIVHRKCF
Sbjct: 338 KYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377
>At3g53750.1 68416.m05938 actin 3 (ACT3) identical to SP|P53493
Actin 3 {Arabidopsis thaliana}; supported by full-length
cDNA: Ceres: 19581.
Length = 377
Score = 87.0 bits (206), Expect = 6e-18
Identities = 38/40 (95%), Positives = 39/40 (97%)
Frame = +1
Query: 10 KYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 129
KYSVWIGGSILASLSTFQQMWI+K EYDESGPSIVHRKCF
Sbjct: 338 KYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377
>At3g46520.1 68416.m05050 actin 12 (ACT12) identical to SP|P53497
Actin 12 {Arabidopsis thaliana}
Length = 377
Score = 87.0 bits (206), Expect = 6e-18
Identities = 38/40 (95%), Positives = 39/40 (97%)
Frame = +1
Query: 10 KYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 129
KYSVWIGGSILASLSTFQQMWI+K EYDESGPSIVHRKCF
Sbjct: 338 KYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377
>At3g12110.1 68416.m01507 actin 11 (ACT11) identical to SP|P53496
Actin 11 {Arabidopsis thaliana}
Length = 377
Score = 87.0 bits (206), Expect = 6e-18
Identities = 38/40 (95%), Positives = 39/40 (97%)
Frame = +1
Query: 10 KYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 129
KYSVWIGGSILASLSTFQQMWI+K EYDESGPSIVHRKCF
Sbjct: 338 KYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377
>At2g37620.1 68415.m04615 actin 1 (ACT1) identical to SP|P10671
Actin 1 (Actin 3) {Arabidopsis thaliana}
Length = 377
Score = 87.0 bits (206), Expect = 6e-18
Identities = 38/40 (95%), Positives = 39/40 (97%)
Frame = +1
Query: 10 KYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 129
KYSVWIGGSILASLSTFQQMWI+K EYDESGPSIVHRKCF
Sbjct: 338 KYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377
>At3g18780.2 68416.m02386 actin 2 (ACT2) identical to SP|Q96292
Actin 2 {Arabidopsis thaliana}; nearly identical to
SP|Q96293 Actin 8 [Arabidopsis thaliana] GI:1669387 and
to At1g49240
Length = 377
Score = 85.4 bits (202), Expect = 2e-17
Identities = 37/40 (92%), Positives = 38/40 (95%)
Frame = +1
Query: 10 KYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 129
KYSVWIGGSILASLSTFQQMWISK EYDE+GP IVHRKCF
Sbjct: 338 KYSVWIGGSILASLSTFQQMWISKAEYDEAGPGIVHRKCF 377
>At1g49240.1 68414.m05520 actin 8 (ACT8) identical to SP|Q96293
Actin 8 {Arabidopsis thaliana}; nearly identical to
SP|Q96292 Actin 2 [Arabidopsis thaliana] GI:1669387, and
to At3g18780
Length = 377
Score = 85.4 bits (202), Expect = 2e-17
Identities = 37/40 (92%), Positives = 38/40 (95%)
Frame = +1
Query: 10 KYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 129
KYSVWIGGSILASLSTFQQMWISK EYDE+GP IVHRKCF
Sbjct: 338 KYSVWIGGSILASLSTFQQMWISKAEYDEAGPGIVHRKCF 377
>At2g42170.1 68415.m05219 actin, putative similar to actin 2
[Arabidopsis thaliana] gi|9293903|dbj|BAB01806
Length = 329
Score = 78.2 bits (184), Expect = 3e-15
Identities = 32/40 (80%), Positives = 38/40 (95%)
Frame = +1
Query: 10 KYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 129
KYSVWIGGSILASLST++QMWI+K EY+E+GP+IVH KCF
Sbjct: 290 KYSVWIGGSILASLSTYEQMWITKAEYEENGPAIVHTKCF 329
>At2g42100.1 68415.m05205 actin, putative very strong similarity to
SP|P53496 Actin 11 {Arabidopsis thaliana}, SP|P53493
Actin 3 {Arabidopsis thaliana}; contains Pfam profile
PF00022: Actin
Length = 378
Score = 73.7 bits (173), Expect = 6e-14
Identities = 31/40 (77%), Positives = 35/40 (87%)
Frame = +1
Query: 10 KYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 129
KYSVW+GGSILASLS+F MWI+K EYDE G +IVHRKCF
Sbjct: 339 KYSVWVGGSILASLSSFAPMWITKAEYDEQGGAIVHRKCF 378
>At2g42090.1 68415.m05204 actin, putative similar to SP|P53496 Actin
11 {Arabidopsis thaliana}; contains Pfam profile
PF00022: Actin
Length = 366
Score = 70.1 bits (164), Expect = 7e-13
Identities = 30/37 (81%), Positives = 33/37 (89%)
Frame = +1
Query: 16 SVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKC 126
SVWIGGSILASLSTF QMWI+K EY+E G +IVHRKC
Sbjct: 329 SVWIGGSILASLSTFHQMWITKDEYEEHGAAIVHRKC 365
>At1g18450.1 68414.m02302 actin-related protein 4 (ARP4) neary
identical to actin-related protein 4 (ARP4) [Arabidopsis
thaliana] GI:21427463; contains Pfam profile PF00022:
Actin; supporting cDNA gi|21427462|gb|AF507912.1|
Length = 441
Score = 66.1 bits (154), Expect = 1e-11
Identities = 27/39 (69%), Positives = 32/39 (82%)
Frame = +1
Query: 10 KYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKC 126
++SVWIGGSILASL +FQQMW SK EY+E G S + RKC
Sbjct: 402 RFSVWIGGSILASLGSFQQMWFSKSEYEEHGASYIQRKC 440
>At3g60830.1 68416.m06805 actin-related protein 7 (ARP7) identical
to actin-related protein 7 (ARP7) [Arabidopsis thaliana]
GI:21427469; contains Pfam profile PF00022: Actin
Length = 363
Score = 59.3 bits (137), Expect = 1e-09
Identities = 23/41 (56%), Positives = 31/41 (75%)
Frame = +1
Query: 7 GKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 129
G YS W+GG+ILA + Q ++K +YDE+GPS+VHRKCF
Sbjct: 323 GMYSAWVGGAILAKVVFPQNQHVTKADYDETGPSVVHRKCF 363
>At3g18780.1 68416.m02385 actin 2 (ACT2) identical to SP|Q96292
Actin 2 {Arabidopsis thaliana}; nearly identical to
SP|Q96293 Actin 8 [Arabidopsis thaliana] GI:1669387 and
to At1g49240
Length = 371
Score = 44.0 bits (99), Expect = 5e-05
Identities = 20/24 (83%), Positives = 22/24 (91%)
Frame = +1
Query: 10 KYSVWIGGSILASLSTFQQMWISK 81
KYSVWIGGSILASLSTFQQ+ I +
Sbjct: 338 KYSVWIGGSILASLSTFQQVKIDQ 361
>At3g33520.1 68416.m04291 actin-related protein 6 (ARP6) nearly
identical to actin-related protein 6 (ARP6) [Arabidopsis
thaliana] GI:21427467; contains Pfam profile PF00022:
Actin
Length = 421
Score = 39.1 bits (87), Expect = 0.002
Identities = 17/37 (45%), Positives = 24/37 (64%)
Frame = +1
Query: 19 VWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 129
VW GGS+LAS F+ M ++K EY+E G + R+ F
Sbjct: 384 VWRGGSLLASSPDFESMCVTKAEYEELGSARCRRRFF 420
>At1g13180.1 68414.m01528 actin-related protein 3 (ARP3) identical
to actin-related protein 3 (ARP3) [Arabidopsis thaliana]
GI:21427461; contains Pfam profile PF00022: Actin
Length = 427
Score = 36.3 bits (80), Expect = 0.011
Identities = 15/34 (44%), Positives = 23/34 (67%)
Frame = +1
Query: 10 KYSVWIGGSILASLSTFQQMWISKQEYDESGPSI 111
+++VW GGS+L+S F +K+EY+E G SI
Sbjct: 383 RFAVWFGGSVLSSTPEFFASCRTKEEYEEYGASI 416
>At5g13820.1 68418.m01615 telomeric DNA-binding protein 1 (TBP1)
identical to telomeric DNA-binding protein 1
[Arabidopsis thaliana] gi|13641340|gb|AAK31590
Length = 640
Score = 27.1 bits (57), Expect = 6.5
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = +3
Query: 252 IVNSDGGSERGAAGAPLPPSSVLHS 326
+VN D GSE+GA L S LHS
Sbjct: 156 VVNEDAGSEQGANTFSLKDPSQLHS 180
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,718,178
Number of Sequences: 28952
Number of extensions: 131235
Number of successful extensions: 314
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 312
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 314
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 811731120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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