Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_G09
(421 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0250 + 2052599-2053358,2053581-2053604,2054813-2054848,205... 32 0.22
01_01_0235 - 1964981-1964997,1965545-1966325 30 0.66
03_05_0877 + 28443481-28443538,28443641-28443911,28444028-284442... 29 1.1
07_03_0898 - 22403337-22404950 29 1.5
07_03_0896 + 22373348-22374946 29 1.5
02_05_0036 - 25292150-25293124,25294021-25294206,25294704-252948... 29 1.5
12_02_0657 - 21605598-21606199,21606524-21606641 28 2.7
01_06_1325 + 36316307-36316527,36317074-36317126,36317451-36317791 28 2.7
08_02_1264 + 25706009-25706148,25706613-25706716,25707108-257072... 27 6.1
01_06_1161 + 35002125-35002414,35002511-35002648,35003658-35004357 27 6.1
12_02_1179 - 26720533-26721021,26721329-26722597 27 8.1
10_08_0485 + 18235597-18236256,18236353-18236400,18236522-182366... 27 8.1
09_02_0058 - 3704138-3704257,3704355-3704421,3704502-3704641,370... 27 8.1
09_01_0056 + 914117-914464 27 8.1
06_03_0996 + 26731442-26732121,26732573-26732772,26732930-26733330 27 8.1
>01_01_0250 +
2052599-2053358,2053581-2053604,2054813-2054848,
2055047-2056284
Length = 685
Score = 31.9 bits (69), Expect = 0.22
Identities = 21/72 (29%), Positives = 28/72 (38%), Gaps = 2/72 (2%)
Frame = +3
Query: 159 DVPQVNQAPVTEVCLGCICQAVSGCKQGTKCEGDACGLFHITWPYW-ADAGKPTLNGQSP 335
D P + P CL A T C CG I +P+W D+ P + +P
Sbjct: 2 DTPLLLLLPFLAACLLAPRHAAEAAV--TSCAPRRCGNVTIAYPFWLPDSSPPPSSSSAP 59
Query: 336 DAPDAYP-NCAN 368
P A+ NC N
Sbjct: 60 CGPAAFQVNCDN 71
>01_01_0235 - 1964981-1964997,1965545-1966325
Length = 265
Score = 30.3 bits (65), Expect = 0.66
Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Frame = +3
Query: 189 TEVCLGCICQAVSGCKQG-TKCEGDACGLFHITWPYWADAGKPTLNGQSPDAP-DAYPNC 362
T +CL + + C + +CE CG + +P+W G P N + +P A +C
Sbjct: 4 TLLCLPLLASLLLLCHRARAECEPATCGNLTVRYPFW--LGGPNFNQSNQSSPSSALASC 61
Query: 363 ANEPY 377
+ +
Sbjct: 62 GHPAF 66
>03_05_0877 +
28443481-28443538,28443641-28443911,28444028-28444242,
28444329-28445057,28445143-28445297,28445384-28445965
Length = 669
Score = 29.5 bits (63), Expect = 1.1
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +3
Query: 195 VCLGCICQAVSGCKQGTKCEGDACGL 272
+C GC+C G K G K +G G+
Sbjct: 17 LCSGCLCGVADGAKGGRKTKGPVIGI 42
>07_03_0898 - 22403337-22404950
Length = 537
Score = 29.1 bits (62), Expect = 1.5
Identities = 13/32 (40%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Frame = -1
Query: 268 PQASPSHLVPCLQPDTAWQM-QPRHTSVTGAW 176
P SP PC P AW +P TSV W
Sbjct: 76 PSCSPGAASPCALPPGAWAWDRPAETSVVSEW 107
>07_03_0896 + 22373348-22374946
Length = 532
Score = 29.1 bits (62), Expect = 1.5
Identities = 13/32 (40%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Frame = -1
Query: 268 PQASPSHLVPCLQPDTAWQM-QPRHTSVTGAW 176
P SP PC P AW +P TSV W
Sbjct: 77 PSCSPGAASPCALPPGAWAWDRPAETSVVSEW 108
>02_05_0036 -
25292150-25293124,25294021-25294206,25294704-25294874,
25295135-25295353,25295461-25295712,25295802-25295903,
25296487-25296684,25296762-25297046,25297640-25297709,
25297797-25297970,25298825-25298952,25299059-25299163,
25299686-25300030,25300361-25300563,25300964-25301045,
25301667-25301744
Length = 1190
Score = 29.1 bits (62), Expect = 1.5
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = +1
Query: 193 KYVSVASARLCLAASKALSVKATLAVCSISHGR 291
K+VS A + +C A ++ ++A + VCS+ H R
Sbjct: 97 KFVSEAVSYICEAKLRSADIQAAVQVCSLLHQR 129
>12_02_0657 - 21605598-21606199,21606524-21606641
Length = 239
Score = 28.3 bits (60), Expect = 2.7
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = -3
Query: 377 VGLVRAVRVSVRRIGTLTV*CRFASISPVRPCDMEQTASVA 255
VG A R +G V R IS +RPCD E++A+ A
Sbjct: 77 VGFAEATVYGARGVGEPFV-VRAQGISAIRPCDAEESAAHA 116
>01_06_1325 + 36316307-36316527,36317074-36317126,36317451-36317791
Length = 204
Score = 28.3 bits (60), Expect = 2.7
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = -3
Query: 377 VGLVRAVRVSVRRIGTLTV*CRFASISPVRPCDMEQTASVA 255
VG A R +G V R IS +RPCD E++A+ A
Sbjct: 129 VGFAEATVYGARGVGEPFV-VRAQGISAIRPCDAEESAAHA 168
>08_02_1264 +
25706009-25706148,25706613-25706716,25707108-25707284,
25707775-25709708,25709781-25709867,25710058-25710091,
25710293-25710381,25710522-25710674
Length = 905
Score = 27.1 bits (57), Expect = 6.1
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
Frame = +3
Query: 237 QGTKCEGDACGLFH---ITWPYWADAGKPTLNGQSPDA 341
QGTKC +AC + + A AG LNGQ D+
Sbjct: 608 QGTKCVPEACSSGENSPVFYAARASAGNEPLNGQDTDS 645
>01_06_1161 + 35002125-35002414,35002511-35002648,35003658-35004357
Length = 375
Score = 27.1 bits (57), Expect = 6.1
Identities = 17/49 (34%), Positives = 21/49 (42%)
Frame = -1
Query: 304 ASAQYGHVIWNKPQASPSHLVPCLQPDTAWQMQPRHTSVTGAWFT*GTS 158
A+A H + +V DT W PR+T T AW T GTS
Sbjct: 323 AAAAADHRVLIGDDGDVQRIVAARIADTVW---PRYTRDTSAWETAGTS 368
>12_02_1179 - 26720533-26721021,26721329-26722597
Length = 585
Score = 26.6 bits (56), Expect = 8.1
Identities = 15/65 (23%), Positives = 29/65 (44%), Gaps = 4/65 (6%)
Frame = +3
Query: 87 IMASAVIKFSAIILIVG----VCLADVYDVPQVNQAPVTEVCLGCICQAVSGCKQGTKCE 254
++ SA+++ + VG VC Y V + + +G +C+ + C TK E
Sbjct: 67 LIVSAIVRMMSSRNAVGCSKVVCALSRYVVDPLATEALKSAIIGSLCRPFADCLMSTKVE 126
Query: 255 GDACG 269
++ G
Sbjct: 127 SNSFG 131
>10_08_0485 +
18235597-18236256,18236353-18236400,18236522-18236644,
18237062-18237211,18237702-18237873,18237965-18238025,
18238129-18238237
Length = 440
Score = 26.6 bits (56), Expect = 8.1
Identities = 12/43 (27%), Positives = 22/43 (51%)
Frame = +3
Query: 3 TRRARAYYTPFFISIFNYYFILNIF*SVIMASAVIKFSAIILI 131
T + + TP F SIF + ++ F V + A++ AI ++
Sbjct: 389 TLSSLTFLTPMFASIFGFLYLGETFSPVQLGGALLTLVAIYMV 431
>09_02_0058 -
3704138-3704257,3704355-3704421,3704502-3704641,
3705332-3705424,3705927-3706109,3706491-3706595,
3706738-3706818,3706905-3707046,3707207-3707286,
3707456-3707568,3708051-3708297,3708659-3709051
Length = 587
Score = 26.6 bits (56), Expect = 8.1
Identities = 22/55 (40%), Positives = 26/55 (47%), Gaps = 6/55 (10%)
Frame = +3
Query: 261 ACGLFHITWPYWADAGKP---TLNGQ--SPDAPDAYPNCA-NEPYCAATAVQNYV 407
+CGLFHI +P D K T+ GQ D P A N AAT QNY+
Sbjct: 145 SCGLFHIAYPSAPDQLKAELRTIYGQLCQDDMPMVRRAAASNLGKFAATVEQNYL 199
>09_01_0056 + 914117-914464
Length = 115
Score = 26.6 bits (56), Expect = 8.1
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = +3
Query: 285 WPYWADAGKPTLN 323
WP W D+G PTL+
Sbjct: 16 WPLWLDSGPPTLD 28
>06_03_0996 + 26731442-26732121,26732573-26732772,26732930-26733330
Length = 426
Score = 26.6 bits (56), Expect = 8.1
Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Frame = -2
Query: 186 PVLG-LLEEHHKHQQDTRRQSKLWH 115
P +G +L HH HQQD + S L H
Sbjct: 344 PQIGAMLHHHHHHQQDHMQVSSLVH 368
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,318,344
Number of Sequences: 37544
Number of extensions: 232035
Number of successful extensions: 612
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 598
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 611
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 766563072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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