Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_G09
         (421 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52941| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.1  
SB_59638| Best HMM Match : HNF-1_N (HMM E-Value=0)                     28   2.7  
SB_31695| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.7  
SB_14136| Best HMM Match : Exonuc_X-T (HMM E-Value=6e-25)              28   3.6  
SB_23044| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.8  
SB_50089| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.3  
SB_39703| Best HMM Match : PHD (HMM E-Value=9.3e-12)                   27   8.3  
SB_33703| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.3  

>SB_52941| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 772

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -3

Query: 170 LRNIINISKTHADNQNYGTEL 108
           +  IIN S +H DNQN GT++
Sbjct: 629 INTIINTSNSHFDNQNNGTDV 649


>SB_59638| Best HMM Match : HNF-1_N (HMM E-Value=0)
          Length = 808

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 17/52 (32%), Positives = 25/52 (48%)
 Frame = -3

Query: 416 ELAHVILDSSSSAVGLVRAVRVSVRRIGTLTV*CRFASISPVRPCDMEQTAS 261
           EL   +LDS  S   LVR V     R+    +  + A+++   PC  E T+S
Sbjct: 11  ELIRALLDSGLSGDDLVRIVDTEFSRVQD-RITAKSATLTQAEPCTPEPTSS 61


>SB_31695| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 320

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +2

Query: 17  RILHAIFYIHLQLLFYFKYFLIRHNGVRRD*VQCHNFDC 133
           RIL+   Y  +Q LF+F Y     +G + D V CH   C
Sbjct: 100 RILYCGVYSRVQRLFFFNY----QSGAKGDVVNCHIILC 134


>SB_14136| Best HMM Match : Exonuc_X-T (HMM E-Value=6e-25)
          Length = 1597

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 18/85 (21%), Positives = 34/85 (40%)
 Frame = +3

Query: 165 PQVNQAPVTEVCLGCICQAVSGCKQGTKCEGDACGLFHITWPYWADAGKPTLNGQSPDAP 344
           P+V Q  + E   G   +  S C+ G      +  L +       D   P+LNG+  + P
Sbjct: 73  PKVEQTSIIEQVFGAGVEQKSKCRCGKDATKPSVSLLY-------DLEYPSLNGKPTETP 125

Query: 345 DAYPNCANEPYCAATAVQNYVSQFG 419
            ++ +      C   ++Q +  + G
Sbjct: 126 VSFESIIEATLCREQSMQAWCDKCG 150


>SB_23044| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2162

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
 Frame = +3

Query: 141 CLADVYDVPQVNQAPVTEVCLGCICQAVSGCKQGTKCE----GDAC 266
           C+    +VP  +++  TE   GC   +++GC     C+    GD C
Sbjct: 164 CMESGTNVPFTSESKPTEPTPGCPLDSIAGCPNRKACDAGFTGDYC 209


>SB_50089| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 91

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 12/48 (25%), Positives = 21/48 (43%)
 Frame = +3

Query: 276 HITWPYWADAGKPTLNGQSPDAPDAYPNCANEPYCAATAVQNYVSQFG 419
           + TW +W+  G P ++  S  A  +       P+ A    QN ++  G
Sbjct: 36  YATWFFWSSRGYPVVSLASQPASQSVSRATPRPHTAPKWRQNTITAQG 83


>SB_39703| Best HMM Match : PHD (HMM E-Value=9.3e-12)
          Length = 886

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = -1

Query: 286 HVIWNKPQASPSHLVPCLQP-DTAWQMQPRHTSVTGAWFT 170
           HV+W++ +  PSHL   ++  +T W++      + G W+T
Sbjct: 371 HVLWDRIKPDPSHLSGVMKKIETFWRICIL-PEMLGRWYT 409


>SB_33703| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 745

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = +3

Query: 261 ACGLFHITWPYWADAGKPTLNGQSPDAPDAYPNC-ANEPYCAATAV 395
           +C +F ++ P   D  K TLN     A    P+C A  PY  A A+
Sbjct: 300 SCCMFEVSRPSDEDNEKVTLNPVESIACQTTPSCIAVSPYIPAEAI 345


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,073,901
Number of Sequences: 59808
Number of extensions: 267340
Number of successful extensions: 672
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 627
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 672
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 789494848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)