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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_G09
         (421 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY393551-1|AAR32601.1|  164|Homo sapiens immunoglobulin heavy ch...    32   0.90 
AY393565-1|AAR32613.1|  152|Homo sapiens immunoglobulin heavy ch...    30   3.6  
AY393555-1|AAR32605.1|  152|Homo sapiens immunoglobulin heavy ch...    30   3.6  
Y08418-1|CAA69695.1|  503|Homo sapiens nicotinic acetylcholine r...    29   8.4  
X53559-1|CAA37625.1|  474|Homo sapiens neuronal nicotinic acetyl...    29   8.4  
U62432-1|AAB40110.1|  504|Homo sapiens nicotinic acetylcholine r...    29   8.4  
M86383-1|AAC84176.1|  502|Homo sapiens nicotinic acetylcholine r...    29   8.4  
M37981-1|AAA59942.1|  503|Homo sapiens neuronal nicotinic acetyl...    29   8.4  
BT006897-1|AAP35543.1|  505|Homo sapiens cholinergic receptor, n...    29   8.4  
BT006646-1|AAP35292.1|  489|Homo sapiens cholinergic receptor, n...    29   8.4  
BC098443-1|AAH98443.1|  504|Homo sapiens cholinergic receptor, n...    29   8.4  
BC041175-1|AAH41175.1|  434|Homo sapiens transcription factor AP...    29   8.4  
BC006114-1|AAH06114.1|  489|Homo sapiens CHRNA3 protein protein.       29   8.4  
BC002996-1|AAH02996.1|  505|Homo sapiens cholinergic receptor, n...    29   8.4  
BC001642-1|AAH01642.1|  505|Homo sapiens cholinergic receptor, n...    29   8.4  
BC000513-1|AAH00513.1|  505|Homo sapiens cholinergic receptor, n...    29   8.4  
AY326454-1|AAQ91614.1|  442|Homo sapiens transcription factor AP...    29   8.4  
AL157951-1|CAI23520.1|  442|Homo sapiens transcription factor AP...    29   8.4  
AJ007783-1|CAA07682.1|  504|Homo sapiens nicotinic acetylcholine...    29   8.4  
AF385584-1|AAK68110.1|  489|Homo sapiens nicotinic cholinergic r...    29   8.4  
AB209128-1|BAD92365.1|  295|Homo sapiens serum response factor (...    29   8.4  

>AY393551-1|AAR32601.1|  164|Homo sapiens immunoglobulin heavy chain
           variable region protein.
          Length = 164

 Score = 31.9 bits (69), Expect = 0.90
 Identities = 19/69 (27%), Positives = 26/69 (37%), Gaps = 2/69 (2%)
 Frame = +3

Query: 174 NQAPVTEVCLGCICQAVSGCKQGTKCEGDACGLFHITWPYWADAGKPTLNGQSPDAPDAY 353
           N  PV      C   +V  C+  T+C       FH     W      T++  S  AP  +
Sbjct: 74  NMDPVDTATYYCARISVEDCRS-TRCHSRFRYYFHYGMDVWGQGTTVTVSSGSASAPTLF 132

Query: 354 P--NCANEP 374
           P  +C N P
Sbjct: 133 PLVSCENSP 141


>AY393565-1|AAR32613.1|  152|Homo sapiens immunoglobulin heavy chain
           variable region protein.
          Length = 152

 Score = 29.9 bits (64), Expect = 3.6
 Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
 Frame = +3

Query: 267 GLFHITWPYWADAGKPTLNGQSPDAPDAYP--NCANEP 374
           GL H  + YW      T++  S  AP  +P  +C N P
Sbjct: 92  GLLHTPFDYWGQGTLVTVSSGSASAPTLFPLVSCENSP 129


>AY393555-1|AAR32605.1|  152|Homo sapiens immunoglobulin heavy chain
           variable region protein.
          Length = 152

 Score = 29.9 bits (64), Expect = 3.6
 Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
 Frame = +3

Query: 267 GLFHITWPYWADAGKPTLNGQSPDAPDAYP--NCANEP 374
           GL H  + YW      T++  S  AP  +P  +C N P
Sbjct: 92  GLLHTPFDYWGQGTLVTVSSGSASAPTLFPLVSCENSP 129


>Y08418-1|CAA69695.1|  503|Homo sapiens nicotinic acetylcholine
           receptor alpha3 subunit precursor protein.
          Length = 503

 Score = 28.7 bits (61), Expect = 8.4
 Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
 Frame = +3

Query: 201 LGCICQAVS-GCKQGTKCEGDACGLFH 278
           L C  +A S GCK+G  C+   CG  H
Sbjct: 378 LNCFSRAESKGCKEGYPCQDGMCGYCH 404


>X53559-1|CAA37625.1|  474|Homo sapiens neuronal nicotinic
           acetylcholine receptor alpha-3merase protein.
          Length = 474

 Score = 28.7 bits (61), Expect = 8.4
 Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
 Frame = +3

Query: 201 LGCICQAVS-GCKQGTKCEGDACGLFH 278
           L C  +A S GCK+G  C+   CG  H
Sbjct: 349 LNCFSRAESKGCKEGYPCQDGMCGYCH 375


>U62432-1|AAB40110.1|  504|Homo sapiens nicotinic acetylcholine
           receptor alpha3 subunit precursor protein.
          Length = 504

 Score = 28.7 bits (61), Expect = 8.4
 Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
 Frame = +3

Query: 201 LGCICQAVS-GCKQGTKCEGDACGLFH 278
           L C  +A S GCK+G  C+   CG  H
Sbjct: 379 LNCFSRAESKGCKEGYPCQDGMCGYCH 405


>M86383-1|AAC84176.1|  502|Homo sapiens nicotinic acetylcholine
           receptor alpha 3 subunit precursor protein.
          Length = 502

 Score = 28.7 bits (61), Expect = 8.4
 Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
 Frame = +3

Query: 201 LGCICQAVS-GCKQGTKCEGDACGLFH 278
           L C  +A S GCK+G  C+   CG  H
Sbjct: 377 LNCFSRAESKGCKEGYPCQDGMCGYCH 403


>M37981-1|AAA59942.1|  503|Homo sapiens neuronal nicotinic
           acetylcholine receptor protein.
          Length = 503

 Score = 28.7 bits (61), Expect = 8.4
 Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
 Frame = +3

Query: 201 LGCICQAVS-GCKQGTKCEGDACGLFH 278
           L C  +A S GCK+G  C+   CG  H
Sbjct: 378 LNCFSRAESKGCKEGYPCQDGMCGYCH 404


>BT006897-1|AAP35543.1|  505|Homo sapiens cholinergic receptor,
           nicotinic, alpha polypeptide 3 protein.
          Length = 505

 Score = 28.7 bits (61), Expect = 8.4
 Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
 Frame = +3

Query: 201 LGCICQAVS-GCKQGTKCEGDACGLFH 278
           L C  +A S GCK+G  C+   CG  H
Sbjct: 380 LNCFSRAESKGCKEGYPCQDGMCGYCH 406


>BT006646-1|AAP35292.1|  489|Homo sapiens cholinergic receptor,
           nicotinic, alpha polypeptide 3 protein.
          Length = 489

 Score = 28.7 bits (61), Expect = 8.4
 Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
 Frame = +3

Query: 201 LGCICQAVS-GCKQGTKCEGDACGLFH 278
           L C  +A S GCK+G  C+   CG  H
Sbjct: 380 LNCFSRAESKGCKEGYPCQDGMCGYCH 406


>BC098443-1|AAH98443.1|  504|Homo sapiens cholinergic receptor,
           nicotinic, alpha 3 protein.
          Length = 504

 Score = 28.7 bits (61), Expect = 8.4
 Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
 Frame = +3

Query: 201 LGCICQAVS-GCKQGTKCEGDACGLFH 278
           L C  +A S GCK+G  C+   CG  H
Sbjct: 379 LNCFSRAESKGCKEGYPCQDGMCGYCH 405


>BC041175-1|AAH41175.1|  434|Homo sapiens transcription factor AP-2
           epsilon (activating enhancer binding protein 2 epsilo
           protein.
          Length = 434

 Score = 28.7 bits (61), Expect = 8.4
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +3

Query: 312 PTLNGQSPDAPDAYPNCANEPY 377
           P   GQ+PDA  A+P+ A +PY
Sbjct: 55  PLPYGQAPDAAAAFPHLAGDPY 76


>BC006114-1|AAH06114.1|  489|Homo sapiens CHRNA3 protein protein.
          Length = 489

 Score = 28.7 bits (61), Expect = 8.4
 Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
 Frame = +3

Query: 201 LGCICQAVS-GCKQGTKCEGDACGLFH 278
           L C  +A S GCK+G  C+   CG  H
Sbjct: 380 LNCFSRAESKGCKEGYPCQDGMCGYCH 406


>BC002996-1|AAH02996.1|  505|Homo sapiens cholinergic receptor,
           nicotinic, alpha 3 protein.
          Length = 505

 Score = 28.7 bits (61), Expect = 8.4
 Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
 Frame = +3

Query: 201 LGCICQAVS-GCKQGTKCEGDACGLFH 278
           L C  +A S GCK+G  C+   CG  H
Sbjct: 380 LNCFSRAESKGCKEGYPCQDGMCGYCH 406


>BC001642-1|AAH01642.1|  505|Homo sapiens cholinergic receptor,
           nicotinic, alpha 3 protein.
          Length = 505

 Score = 28.7 bits (61), Expect = 8.4
 Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
 Frame = +3

Query: 201 LGCICQAVS-GCKQGTKCEGDACGLFH 278
           L C  +A S GCK+G  C+   CG  H
Sbjct: 380 LNCFSRAESKGCKEGYPCQDGMCGYCH 406


>BC000513-1|AAH00513.1|  505|Homo sapiens cholinergic receptor,
           nicotinic, alpha 3 protein.
          Length = 505

 Score = 28.7 bits (61), Expect = 8.4
 Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
 Frame = +3

Query: 201 LGCICQAVS-GCKQGTKCEGDACGLFH 278
           L C  +A S GCK+G  C+   CG  H
Sbjct: 380 LNCFSRAESKGCKEGYPCQDGMCGYCH 406


>AY326454-1|AAQ91614.1|  442|Homo sapiens transcription factor AP-2
           epsilon protein.
          Length = 442

 Score = 28.7 bits (61), Expect = 8.4
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +3

Query: 312 PTLNGQSPDAPDAYPNCANEPY 377
           P   GQ+PDA  A+P+ A +PY
Sbjct: 63  PLPYGQAPDAAAAFPHLAGDPY 84


>AL157951-1|CAI23520.1|  442|Homo sapiens transcription factor AP-2
           epsilon (activating enhancer binding protein 2 epsilo
           protein.
          Length = 442

 Score = 28.7 bits (61), Expect = 8.4
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +3

Query: 312 PTLNGQSPDAPDAYPNCANEPY 377
           P   GQ+PDA  A+P+ A +PY
Sbjct: 63  PLPYGQAPDAAAAFPHLAGDPY 84


>AJ007783-1|CAA07682.1|  504|Homo sapiens nicotinic acetylcholine
           receptor alpha-3 subunit protein.
          Length = 504

 Score = 28.7 bits (61), Expect = 8.4
 Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
 Frame = +3

Query: 201 LGCICQAVS-GCKQGTKCEGDACGLFH 278
           L C  +A S GCK+G  C+   CG  H
Sbjct: 379 LNCFSRAESKGCKEGYPCQDGMCGYCH 405


>AF385584-1|AAK68110.1|  489|Homo sapiens nicotinic cholinergic
           receptor alpha 3 protein.
          Length = 489

 Score = 28.7 bits (61), Expect = 8.4
 Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
 Frame = +3

Query: 201 LGCICQAVS-GCKQGTKCEGDACGLFH 278
           L C  +A S GCK+G  C+   CG  H
Sbjct: 374 LNCFSRAESKGCKEGYPCQDGMCGYCH 400


>AB209128-1|BAD92365.1|  295|Homo sapiens serum response factor
           (c-fos serum response element-binding transcription
           facto protein.
          Length = 295

 Score = 28.7 bits (61), Expect = 8.4
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +3

Query: 156 YDVPQVNQAPVTEVCLGCICQAVSG 230
           Y V + + +  T+VCLGC+C+   G
Sbjct: 258 YQVSESDSSGETKVCLGCLCERREG 282


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 61,408,951
Number of Sequences: 237096
Number of extensions: 1269948
Number of successful extensions: 2749
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 2682
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2749
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3202085264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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