BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= S06A01NCLL0001_G09 (421 letters) Database: human 237,096 sequences; 76,859,062 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AY393551-1|AAR32601.1| 164|Homo sapiens immunoglobulin heavy ch... 32 0.90 AY393565-1|AAR32613.1| 152|Homo sapiens immunoglobulin heavy ch... 30 3.6 AY393555-1|AAR32605.1| 152|Homo sapiens immunoglobulin heavy ch... 30 3.6 Y08418-1|CAA69695.1| 503|Homo sapiens nicotinic acetylcholine r... 29 8.4 X53559-1|CAA37625.1| 474|Homo sapiens neuronal nicotinic acetyl... 29 8.4 U62432-1|AAB40110.1| 504|Homo sapiens nicotinic acetylcholine r... 29 8.4 M86383-1|AAC84176.1| 502|Homo sapiens nicotinic acetylcholine r... 29 8.4 M37981-1|AAA59942.1| 503|Homo sapiens neuronal nicotinic acetyl... 29 8.4 BT006897-1|AAP35543.1| 505|Homo sapiens cholinergic receptor, n... 29 8.4 BT006646-1|AAP35292.1| 489|Homo sapiens cholinergic receptor, n... 29 8.4 BC098443-1|AAH98443.1| 504|Homo sapiens cholinergic receptor, n... 29 8.4 BC041175-1|AAH41175.1| 434|Homo sapiens transcription factor AP... 29 8.4 BC006114-1|AAH06114.1| 489|Homo sapiens CHRNA3 protein protein. 29 8.4 BC002996-1|AAH02996.1| 505|Homo sapiens cholinergic receptor, n... 29 8.4 BC001642-1|AAH01642.1| 505|Homo sapiens cholinergic receptor, n... 29 8.4 BC000513-1|AAH00513.1| 505|Homo sapiens cholinergic receptor, n... 29 8.4 AY326454-1|AAQ91614.1| 442|Homo sapiens transcription factor AP... 29 8.4 AL157951-1|CAI23520.1| 442|Homo sapiens transcription factor AP... 29 8.4 AJ007783-1|CAA07682.1| 504|Homo sapiens nicotinic acetylcholine... 29 8.4 AF385584-1|AAK68110.1| 489|Homo sapiens nicotinic cholinergic r... 29 8.4 AB209128-1|BAD92365.1| 295|Homo sapiens serum response factor (... 29 8.4 >AY393551-1|AAR32601.1| 164|Homo sapiens immunoglobulin heavy chain variable region protein. Length = 164 Score = 31.9 bits (69), Expect = 0.90 Identities = 19/69 (27%), Positives = 26/69 (37%), Gaps = 2/69 (2%) Frame = +3 Query: 174 NQAPVTEVCLGCICQAVSGCKQGTKCEGDACGLFHITWPYWADAGKPTLNGQSPDAPDAY 353 N PV C +V C+ T+C FH W T++ S AP + Sbjct: 74 NMDPVDTATYYCARISVEDCRS-TRCHSRFRYYFHYGMDVWGQGTTVTVSSGSASAPTLF 132 Query: 354 P--NCANEP 374 P +C N P Sbjct: 133 PLVSCENSP 141 >AY393565-1|AAR32613.1| 152|Homo sapiens immunoglobulin heavy chain variable region protein. Length = 152 Score = 29.9 bits (64), Expect = 3.6 Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 2/38 (5%) Frame = +3 Query: 267 GLFHITWPYWADAGKPTLNGQSPDAPDAYP--NCANEP 374 GL H + YW T++ S AP +P +C N P Sbjct: 92 GLLHTPFDYWGQGTLVTVSSGSASAPTLFPLVSCENSP 129 >AY393555-1|AAR32605.1| 152|Homo sapiens immunoglobulin heavy chain variable region protein. Length = 152 Score = 29.9 bits (64), Expect = 3.6 Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 2/38 (5%) Frame = +3 Query: 267 GLFHITWPYWADAGKPTLNGQSPDAPDAYP--NCANEP 374 GL H + YW T++ S AP +P +C N P Sbjct: 92 GLLHTPFDYWGQGTLVTVSSGSASAPTLFPLVSCENSP 129 >Y08418-1|CAA69695.1| 503|Homo sapiens nicotinic acetylcholine receptor alpha3 subunit precursor protein. Length = 503 Score = 28.7 bits (61), Expect = 8.4 Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 1/27 (3%) Frame = +3 Query: 201 LGCICQAVS-GCKQGTKCEGDACGLFH 278 L C +A S GCK+G C+ CG H Sbjct: 378 LNCFSRAESKGCKEGYPCQDGMCGYCH 404 >X53559-1|CAA37625.1| 474|Homo sapiens neuronal nicotinic acetylcholine receptor alpha-3merase protein. Length = 474 Score = 28.7 bits (61), Expect = 8.4 Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 1/27 (3%) Frame = +3 Query: 201 LGCICQAVS-GCKQGTKCEGDACGLFH 278 L C +A S GCK+G C+ CG H Sbjct: 349 LNCFSRAESKGCKEGYPCQDGMCGYCH 375 >U62432-1|AAB40110.1| 504|Homo sapiens nicotinic acetylcholine receptor alpha3 subunit precursor protein. Length = 504 Score = 28.7 bits (61), Expect = 8.4 Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 1/27 (3%) Frame = +3 Query: 201 LGCICQAVS-GCKQGTKCEGDACGLFH 278 L C +A S GCK+G C+ CG H Sbjct: 379 LNCFSRAESKGCKEGYPCQDGMCGYCH 405 >M86383-1|AAC84176.1| 502|Homo sapiens nicotinic acetylcholine receptor alpha 3 subunit precursor protein. Length = 502 Score = 28.7 bits (61), Expect = 8.4 Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 1/27 (3%) Frame = +3 Query: 201 LGCICQAVS-GCKQGTKCEGDACGLFH 278 L C +A S GCK+G C+ CG H Sbjct: 377 LNCFSRAESKGCKEGYPCQDGMCGYCH 403 >M37981-1|AAA59942.1| 503|Homo sapiens neuronal nicotinic acetylcholine receptor protein. Length = 503 Score = 28.7 bits (61), Expect = 8.4 Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 1/27 (3%) Frame = +3 Query: 201 LGCICQAVS-GCKQGTKCEGDACGLFH 278 L C +A S GCK+G C+ CG H Sbjct: 378 LNCFSRAESKGCKEGYPCQDGMCGYCH 404 >BT006897-1|AAP35543.1| 505|Homo sapiens cholinergic receptor, nicotinic, alpha polypeptide 3 protein. Length = 505 Score = 28.7 bits (61), Expect = 8.4 Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 1/27 (3%) Frame = +3 Query: 201 LGCICQAVS-GCKQGTKCEGDACGLFH 278 L C +A S GCK+G C+ CG H Sbjct: 380 LNCFSRAESKGCKEGYPCQDGMCGYCH 406 >BT006646-1|AAP35292.1| 489|Homo sapiens cholinergic receptor, nicotinic, alpha polypeptide 3 protein. Length = 489 Score = 28.7 bits (61), Expect = 8.4 Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 1/27 (3%) Frame = +3 Query: 201 LGCICQAVS-GCKQGTKCEGDACGLFH 278 L C +A S GCK+G C+ CG H Sbjct: 380 LNCFSRAESKGCKEGYPCQDGMCGYCH 406 >BC098443-1|AAH98443.1| 504|Homo sapiens cholinergic receptor, nicotinic, alpha 3 protein. Length = 504 Score = 28.7 bits (61), Expect = 8.4 Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 1/27 (3%) Frame = +3 Query: 201 LGCICQAVS-GCKQGTKCEGDACGLFH 278 L C +A S GCK+G C+ CG H Sbjct: 379 LNCFSRAESKGCKEGYPCQDGMCGYCH 405 >BC041175-1|AAH41175.1| 434|Homo sapiens transcription factor AP-2 epsilon (activating enhancer binding protein 2 epsilo protein. Length = 434 Score = 28.7 bits (61), Expect = 8.4 Identities = 11/22 (50%), Positives = 15/22 (68%) Frame = +3 Query: 312 PTLNGQSPDAPDAYPNCANEPY 377 P GQ+PDA A+P+ A +PY Sbjct: 55 PLPYGQAPDAAAAFPHLAGDPY 76 >BC006114-1|AAH06114.1| 489|Homo sapiens CHRNA3 protein protein. Length = 489 Score = 28.7 bits (61), Expect = 8.4 Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 1/27 (3%) Frame = +3 Query: 201 LGCICQAVS-GCKQGTKCEGDACGLFH 278 L C +A S GCK+G C+ CG H Sbjct: 380 LNCFSRAESKGCKEGYPCQDGMCGYCH 406 >BC002996-1|AAH02996.1| 505|Homo sapiens cholinergic receptor, nicotinic, alpha 3 protein. Length = 505 Score = 28.7 bits (61), Expect = 8.4 Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 1/27 (3%) Frame = +3 Query: 201 LGCICQAVS-GCKQGTKCEGDACGLFH 278 L C +A S GCK+G C+ CG H Sbjct: 380 LNCFSRAESKGCKEGYPCQDGMCGYCH 406 >BC001642-1|AAH01642.1| 505|Homo sapiens cholinergic receptor, nicotinic, alpha 3 protein. Length = 505 Score = 28.7 bits (61), Expect = 8.4 Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 1/27 (3%) Frame = +3 Query: 201 LGCICQAVS-GCKQGTKCEGDACGLFH 278 L C +A S GCK+G C+ CG H Sbjct: 380 LNCFSRAESKGCKEGYPCQDGMCGYCH 406 >BC000513-1|AAH00513.1| 505|Homo sapiens cholinergic receptor, nicotinic, alpha 3 protein. Length = 505 Score = 28.7 bits (61), Expect = 8.4 Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 1/27 (3%) Frame = +3 Query: 201 LGCICQAVS-GCKQGTKCEGDACGLFH 278 L C +A S GCK+G C+ CG H Sbjct: 380 LNCFSRAESKGCKEGYPCQDGMCGYCH 406 >AY326454-1|AAQ91614.1| 442|Homo sapiens transcription factor AP-2 epsilon protein. Length = 442 Score = 28.7 bits (61), Expect = 8.4 Identities = 11/22 (50%), Positives = 15/22 (68%) Frame = +3 Query: 312 PTLNGQSPDAPDAYPNCANEPY 377 P GQ+PDA A+P+ A +PY Sbjct: 63 PLPYGQAPDAAAAFPHLAGDPY 84 >AL157951-1|CAI23520.1| 442|Homo sapiens transcription factor AP-2 epsilon (activating enhancer binding protein 2 epsilo protein. Length = 442 Score = 28.7 bits (61), Expect = 8.4 Identities = 11/22 (50%), Positives = 15/22 (68%) Frame = +3 Query: 312 PTLNGQSPDAPDAYPNCANEPY 377 P GQ+PDA A+P+ A +PY Sbjct: 63 PLPYGQAPDAAAAFPHLAGDPY 84 >AJ007783-1|CAA07682.1| 504|Homo sapiens nicotinic acetylcholine receptor alpha-3 subunit protein. Length = 504 Score = 28.7 bits (61), Expect = 8.4 Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 1/27 (3%) Frame = +3 Query: 201 LGCICQAVS-GCKQGTKCEGDACGLFH 278 L C +A S GCK+G C+ CG H Sbjct: 379 LNCFSRAESKGCKEGYPCQDGMCGYCH 405 >AF385584-1|AAK68110.1| 489|Homo sapiens nicotinic cholinergic receptor alpha 3 protein. Length = 489 Score = 28.7 bits (61), Expect = 8.4 Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 1/27 (3%) Frame = +3 Query: 201 LGCICQAVS-GCKQGTKCEGDACGLFH 278 L C +A S GCK+G C+ CG H Sbjct: 374 LNCFSRAESKGCKEGYPCQDGMCGYCH 400 >AB209128-1|BAD92365.1| 295|Homo sapiens serum response factor (c-fos serum response element-binding transcription facto protein. Length = 295 Score = 28.7 bits (61), Expect = 8.4 Identities = 10/25 (40%), Positives = 16/25 (64%) Frame = +3 Query: 156 YDVPQVNQAPVTEVCLGCICQAVSG 230 Y V + + + T+VCLGC+C+ G Sbjct: 258 YQVSESDSSGETKVCLGCLCERREG 282 Database: human Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 76,859,062 Number of sequences in database: 237,096 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 61,408,951 Number of Sequences: 237096 Number of extensions: 1269948 Number of successful extensions: 2749 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 2682 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2749 length of database: 76,859,062 effective HSP length: 83 effective length of database: 57,180,094 effective search space used: 3202085264 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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