Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_G09
         (421 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067611-3|AAC19179.1|  139|Caenorhabditis elegans Hypothetical ...    62   2e-10
U41547-6|AAA83197.1|  139|Caenorhabditis elegans Hypothetical pr...    56   8e-09
AF067611-4|AAC19181.1|  139|Caenorhabditis elegans Hypothetical ...    55   2e-08
AF067611-5|AAC19180.1|  145|Caenorhabditis elegans Hypothetical ...    35   0.021
Z81132-5|CAB03436.1|  345|Caenorhabditis elegans Hypothetical pr...    32   0.14 
U58747-4|AAF99902.2|  159|Caenorhabditis elegans Hypothetical pr...    30   0.58 
Z81109-12|CAE17917.2|  364|Caenorhabditis elegans Hypothetical p...    29   1.0  
AC024826-17|AAF60789.1|  662|Caenorhabditis elegans Hypothetical...    29   1.8  
Z81119-5|CAB03333.1|  386|Caenorhabditis elegans Hypothetical pr...    28   3.1  
Z81047-13|CAB60284.1|  368|Caenorhabditis elegans Hypothetical p...    27   5.5  
U41547-7|AAP40538.1|   58|Caenorhabditis elegans Hypothetical pr...    27   5.5  
U13071-1|AAL65794.1|  462|Caenorhabditis elegans Hypothetical pr...    27   5.5  
U00065-2|AAL27237.1|  672|Caenorhabditis elegans Prion-like-(q/n...    27   7.2  
L16679-1|AAA28092.5| 2104|Caenorhabditis elegans Muscle position...    27   7.2  
AF289202-1|AAK69172.1| 2104|Caenorhabditis elegans transmembrane...    27   7.2  
AF043706-5|ABP57808.1|  536|Caenorhabditis elegans Hypothetical ...    27   7.2  
AF043706-4|AAU87803.1|  394|Caenorhabditis elegans Hypothetical ...    27   7.2  
AF043706-3|ABP57807.1|  534|Caenorhabditis elegans Hypothetical ...    27   7.2  
U97016-4|AAN84886.1| 2692|Caenorhabditis elegans Lethal protein ...    26   9.5  
U97016-3|AAN84885.1| 2695|Caenorhabditis elegans Lethal protein ...    26   9.5  

>AF067611-3|AAC19179.1|  139|Caenorhabditis elegans Hypothetical
           protein C45G7.3 protein.
          Length = 139

 Score = 62.1 bits (144), Expect = 2e-10
 Identities = 32/78 (41%), Positives = 46/78 (58%), Gaps = 5/78 (6%)
 Frame = +3

Query: 198 CLGCICQAVSGCKQGTKCEGD----ACGLFHITWPYWADAGKPTL-NGQSPDAPDAYPNC 362
           CL CIC   SGCK    C  D    +CG + I  PY+ D G+PT  +G++ +A  A+  C
Sbjct: 20  CLHCICMRESGCKP-IGCNMDVGSLSCGYYQIKLPYYEDCGQPTKKSGETTEA--AWKRC 76

Query: 363 ANEPYCAATAVQNYVSQF 416
           AN+  CA T V+NY +++
Sbjct: 77  ANDLSCATTCVENYYNRY 94


>U41547-6|AAA83197.1|  139|Caenorhabditis elegans Hypothetical
           protein F22A3.6a protein.
          Length = 139

 Score = 56.4 bits (130), Expect = 8e-09
 Identities = 32/84 (38%), Positives = 47/84 (55%), Gaps = 5/84 (5%)
 Frame = +3

Query: 180 APVTEVCLGCICQAVSGCKQGTKCEGD----ACGLFHITWPYWADAGKPTLN-GQSPDAP 344
           A V+  CL CIC   SGCK    C  D    +CG + I   Y+ D G+PT   G++ +A 
Sbjct: 14  AYVSADCLHCICMRESGCKP-IGCHMDVGSLSCGYYQIKIGYYEDCGQPTKKAGETTEA- 71

Query: 345 DAYPNCANEPYCAATAVQNYVSQF 416
            A+  CA++  CA T V+NY +++
Sbjct: 72  -AWKRCADDLNCATTCVENYYNRY 94


>AF067611-4|AAC19181.1|  139|Caenorhabditis elegans Hypothetical
           protein C45G7.2 protein.
          Length = 139

 Score = 54.8 bits (126), Expect = 2e-08
 Identities = 29/78 (37%), Positives = 43/78 (55%), Gaps = 5/78 (6%)
 Frame = +3

Query: 198 CLGCICQAVSGCKQGTKCEGD----ACGLFHITWPYWADAGKP-TLNGQSPDAPDAYPNC 362
           CL CIC   SGCK    C  D    +CG + I  PY+ D G+P   +G+S +   A+  C
Sbjct: 20  CLHCICMRESGCKP-IGCHMDVGSLSCGYYQIKIPYYEDCGQPGKKHGESTEV--AWKRC 76

Query: 363 ANEPYCAATAVQNYVSQF 416
           A++  CA   V+NY +++
Sbjct: 77  ADDLKCATNCVENYYNRY 94


>AF067611-5|AAC19180.1|  145|Caenorhabditis elegans Hypothetical
           protein C45G7.1 protein.
          Length = 145

 Score = 35.1 bits (77), Expect = 0.021
 Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
 Frame = +3

Query: 267 GLFHITWPYWADAGKP-TLNGQSPDAPDAYPNCANEPYCAATAVQNYVSQF 416
           G F I  PY+ D G+P    G+S ++  A+  CA++  CA T + NY  ++
Sbjct: 28  GNFVIKLPYYIDCGEPGKQRGESTES--AWKRCADDLDCAETCMMNYYHRY 76


>Z81132-5|CAB03436.1|  345|Caenorhabditis elegans Hypothetical
           protein T26E4.7 protein.
          Length = 345

 Score = 32.3 bits (70), Expect = 0.14
 Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
 Frame = -1

Query: 316 VGLPAS-AQYGHVIWNKPQASPSHLVPCLQPDTAWQMQPR 200
           VG PAS  Q G   W  P A P+ L  C   ++ W   PR
Sbjct: 270 VGAPASPVQMGRSQWYNPLAGPTDLEKCGPHNSTWSYDPR 309


>U58747-4|AAF99902.2|  159|Caenorhabditis elegans Hypothetical
           protein C55F2.2 protein.
          Length = 159

 Score = 30.3 bits (65), Expect = 0.58
 Identities = 19/103 (18%), Positives = 44/103 (42%), Gaps = 5/103 (4%)
 Frame = +3

Query: 123 ILIVGVCLADVYDVPQVNQAPVTEVCLGCICQAVSGCKQGTKCEGD-----ACGLFHITW 287
           + ++ + ++  + +   ++      CL  +C   SGC     C  D      CG F +  
Sbjct: 6   VTVISLLVSVTHQLLMFDKVEDDHPCLLAMCDQDSGCVP-LGCSVDQFDRIGCGYFRLNI 64

Query: 288 PYWADAGKPTLNGQSPDAPDAYPNCANEPYCAATAVQNYVSQF 416
             +    +P    +  +  +A+ NCA +  C+A+ ++   ++F
Sbjct: 65  YQFQQCYQPGKKDEDTEN-EAWMNCAQDYQCSASCIRTLATKF 106


>Z81109-12|CAE17917.2|  364|Caenorhabditis elegans Hypothetical
           protein R10D12.17 protein.
          Length = 364

 Score = 29.5 bits (63), Expect = 1.0
 Identities = 12/36 (33%), Positives = 26/36 (72%), Gaps = 1/36 (2%)
 Frame = +3

Query: 54  YYFILNIF*SVIMASAVIKFSAI-ILIVGVCLADVY 158
           + FI+NI   +I+    ++ ++I +L++GVC+A++Y
Sbjct: 21  FSFIINIVHLLILTRKYMRTASIYVLLIGVCIAELY 56


>AC024826-17|AAF60789.1|  662|Caenorhabditis elegans Hypothetical
           protein Y55F3AM.14 protein.
          Length = 662

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = -1

Query: 325 PFN-VGLPASAQYGHVIWNKPQASPSHLVPCLQPDTAWQMQPRHTSVTG 182
           PF  V LP SA +G +  +KP A P H  P     +A++  P  +S++G
Sbjct: 542 PFTPVELPNSADFGPLTASKPHAVPFH--PSEMCLSAFRKVPESSSISG 588


>Z81119-5|CAB03333.1|  386|Caenorhabditis elegans Hypothetical
           protein T10H4.6 protein.
          Length = 386

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = +3

Query: 27  TPFFISIFNYYFILNIF*SVIMASAVIKFSAI-ILIVGVCLADV 155
           T  F+  F  +  +NI   +++    ++  AI IL++G+CLAD+
Sbjct: 37  TNVFMQFFTVF--INILHLIVLFQKELRTGAIYILMIGICLADI 78


>Z81047-13|CAB60284.1|  368|Caenorhabditis elegans Hypothetical
           protein C41G6.15 protein.
          Length = 368

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 9/32 (28%), Positives = 24/32 (75%), Gaps = 1/32 (3%)
 Frame = +3

Query: 63  ILNIF*SVIMASAVIKFSAI-ILIVGVCLADV 155
           I+N+F  +++    ++ S++ IL++G+C++D+
Sbjct: 46  IVNLFHLIVLFQKELRSSSVYILMIGICISDI 77


>U41547-7|AAP40538.1|   58|Caenorhabditis elegans Hypothetical
           protein F22A3.6b protein.
          Length = 58

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 4/38 (10%)
 Frame = +3

Query: 180 APVTEVCLGCICQAVSGCKQGTKCEGD----ACGLFHI 281
           A V+  CL CIC   SGCK    C  D    +CG + +
Sbjct: 14  AYVSADCLHCICMRESGCKP-IGCHMDVGSLSCGYYQV 50


>U13071-1|AAL65794.1|  462|Caenorhabditis elegans Hypothetical
           protein T22F7.5 protein.
          Length = 462

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 13/40 (32%), Positives = 17/40 (42%)
 Frame = +3

Query: 174 NQAPVTEVCLGCICQAVSGCKQGTKCEGDACGLFHITWPY 293
           N A + +  +G  C A   C  GT C    C   H + PY
Sbjct: 248 NSACLDKSAIGAACTADEQCPNGTVCTLMMCKCAHGSSPY 287


>U00065-2|AAL27237.1|  672|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 25
           protein.
          Length = 672

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +3

Query: 171 VNQAPVTEVCLGCICQAVSGCKQGTKCEGDAC 266
           VN      V +G  CQ+   C  G++C+ + C
Sbjct: 167 VNGQCYNSVNIGSACQSTQQCLGGSQCQNNIC 198


>L16679-1|AAA28092.5| 2104|Caenorhabditis elegans Muscle positioning
           protein 4 protein.
          Length = 2104

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
 Frame = +3

Query: 183 PVTEVCLGCIC--QAVSGCKQGTKCEGDACGLFHITWPYWADAG 308
           PVT+VC G IC  +  + C     CE    G +  T P  AD G
Sbjct: 666 PVTKVCGGDICNPEIATSCPDPEICEKTPFGNWRCTCP--ADLG 707


>AF289202-1|AAK69172.1| 2104|Caenorhabditis elegans transmembrane
           matrix receptor MUP-4 protein.
          Length = 2104

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
 Frame = +3

Query: 183 PVTEVCLGCIC--QAVSGCKQGTKCEGDACGLFHITWPYWADAG 308
           PVT+VC G IC  +  + C     CE    G +  T P  AD G
Sbjct: 666 PVTKVCGGDICNPEIATSCPDPEICEKTPFGNWRCTCP--ADLG 707


>AF043706-5|ABP57808.1|  536|Caenorhabditis elegans Hypothetical
           protein ZC123.4b protein.
          Length = 536

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = +2

Query: 23  LHAIFYIHLQLLFYFKY 73
           LH IFY H QL F F+Y
Sbjct: 293 LHDIFYQHHQLTFVFEY 309


>AF043706-4|AAU87803.1|  394|Caenorhabditis elegans Hypothetical
           protein ZC123.4c protein.
          Length = 394

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = +2

Query: 23  LHAIFYIHLQLLFYFKY 73
           LH IFY H QL F F+Y
Sbjct: 137 LHDIFYQHHQLTFVFEY 153


>AF043706-3|ABP57807.1|  534|Caenorhabditis elegans Hypothetical
           protein ZC123.4a protein.
          Length = 534

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = +2

Query: 23  LHAIFYIHLQLLFYFKY 73
           LH IFY H QL F F+Y
Sbjct: 277 LHDIFYQHHQLTFVFEY 293


>U97016-4|AAN84886.1| 2692|Caenorhabditis elegans Lethal protein 363,
            isoform b protein.
          Length = 2692

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 11/44 (25%), Positives = 22/44 (50%)
 Frame = -3

Query: 146  KTHADNQNYGTELNHGGRHYDGLKNI*NKIIIEDGYKKWRVVCA 15
            K H+  Q Y ++L   GR+    ++  N   ++D  + W + C+
Sbjct: 2237 KEHSFQQTYSSDLKEAGRYVQAFESSGN---VKDLNQAWEIYCS 2277


>U97016-3|AAN84885.1| 2695|Caenorhabditis elegans Lethal protein 363,
            isoform a protein.
          Length = 2695

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 11/44 (25%), Positives = 22/44 (50%)
 Frame = -3

Query: 146  KTHADNQNYGTELNHGGRHYDGLKNI*NKIIIEDGYKKWRVVCA 15
            K H+  Q Y ++L   GR+    ++  N   ++D  + W + C+
Sbjct: 2240 KEHSFQQTYSSDLKEAGRYVQAFESSGN---VKDLNQAWEIYCS 2280


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,536,218
Number of Sequences: 27780
Number of extensions: 197022
Number of successful extensions: 552
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 531
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 545
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 682028672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)