Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_G09
         (421 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g02690.1 68416.m00260 integral membrane family protein simila...    30   0.73 
At2g39260.1 68415.m04821 MIF4G domain-containing protein similar...    29   0.97 
At5g63390.1 68418.m07956 expressed protein contains Pfam PF03138...    27   3.9  
At3g43910.1 68416.m04700 hypothetical protein predicted protein,...    26   9.0  
At3g08580.2 68416.m00996 ADP, ATP carrier protein 1, mitochondri...    26   9.0  
At3g08580.1 68416.m00995 ADP, ATP carrier protein 1, mitochondri...    26   9.0  
At2g19340.2 68415.m06035 membrane protein, putative contains 3 t...    26   9.0  
At2g14570.1 68415.m01632 SWIM zinc finger family protein               26   9.0  

>At3g02690.1 68416.m00260 integral membrane family protein similar
           to PecM protein (GI:5852331) {Vogesella indigofera} and
           PecM protein (SP:P42194) [Erwinia chrysanthemi]
          Length = 417

 Score = 29.9 bits (64), Expect = 0.73
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +3

Query: 21  YYTPFFISIFNYYFILNIF*SVIMASAVIKFSAIILI 131
           + TP F SIF Y ++   F S+ +  A +   AI L+
Sbjct: 374 FLTPMFASIFGYLYLNETFSSLQLVGAAVTLVAIYLV 410


>At2g39260.1 68415.m04821 MIF4G domain-containing protein similar to
           hUPF2 [Homo sapiens] GI:12232320; contains Pfam profile
           PF02854: MIF4G domain
          Length = 1186

 Score = 29.5 bits (63), Expect = 0.97
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +1

Query: 193 KYVSVASARLCLAASKALSVKATLAVCSISHGR 291
           K+VS A   +C A  K+  ++A + +CS+ H R
Sbjct: 89  KFVSEAVTAICEAKLKSSDIQAAVQICSLLHQR 121


>At5g63390.1 68418.m07956 expressed protein contains Pfam PF03138:
           Plant protein family. The function of this family of
           plant proteins is unknown; previously annotated as
           'auxin-independent growth promoter-related protein'
           based on similarity to axi 1 protein (GB:X80301)
           (GI:559920) from [Nicotiana tabacum], which, due to
           scienitific fraud was retracted. Retraction in: Schell
           J. EMBO J 1999 May 17;18(10):2908. PMID:10400497.;
           expression supported by MPSS
          Length = 559

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = -2

Query: 261 RRLHT*CLACSQTQPGRCNRDILPLPVLGLLEEHHKHQ 148
           R+LH       +++ GR +RD++  PV   +  H KH+
Sbjct: 517 RKLHRKSQGYPESRRGRRDRDVIAYPVPECMCRHRKHR 554


>At3g43910.1 68416.m04700 hypothetical protein predicted protein,
           Arabidopsis thaliana
          Length = 195

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = +3

Query: 48  FNYYFILNIF*SVIMASAVIKFSAIILIVGVCLADVYDVPQV 173
           F  ++I+ I  ++  A AV+KF       G C A VYD PQ+
Sbjct: 24  FKPHWIIGIDPNLSGALAVLKFDD----KGSCFAQVYDTPQL 61


>At3g08580.2 68416.m00996 ADP, ATP carrier protein 1, mitochondrial
           / ADP/ATP translocase 1 / adenine nucleotide
           translocator 1 (ANT1) identical to SWISS-PROT:P31167
           ADP,ATP carrier protein 1 (Adenine nucleotide
           translocator 1) [Arabidopsis thaliana]
          Length = 381

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 13/51 (25%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
 Frame = -3

Query: 158 INISKTHADNQNYGTELNHGGRHYDGLKNI*NKIIIEDG----YKKWRVVC 18
           ++ ++T   N     +   GGR +DGL ++  K +  DG    Y+ + + C
Sbjct: 206 LDYARTRLANDAKAAKKGGGGRQFDGLVDVYRKTLKTDGIAGLYRGFNISC 256


>At3g08580.1 68416.m00995 ADP, ATP carrier protein 1, mitochondrial
           / ADP/ATP translocase 1 / adenine nucleotide
           translocator 1 (ANT1) identical to SWISS-PROT:P31167
           ADP,ATP carrier protein 1 (Adenine nucleotide
           translocator 1) [Arabidopsis thaliana]
          Length = 381

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 13/51 (25%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
 Frame = -3

Query: 158 INISKTHADNQNYGTELNHGGRHYDGLKNI*NKIIIEDG----YKKWRVVC 18
           ++ ++T   N     +   GGR +DGL ++  K +  DG    Y+ + + C
Sbjct: 206 LDYARTRLANDAKAAKKGGGGRQFDGLVDVYRKTLKTDGIAGLYRGFNISC 256


>At2g19340.2 68415.m06035 membrane protein, putative contains 3
           transmembrane domains;
          Length = 173

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = +1

Query: 199 VSVASARLCLAASKALSVKATLAVCSISHGRTGLMLANLH*TVKVP 336
           + +    L L  +KA SVKA+ AV  +S      +++ L   +K+P
Sbjct: 124 IGIVMLDLALDKNKAKSVKASYAVAGVSSIVIAYVMSMLFIRIKIP 169


>At2g14570.1 68415.m01632 SWIM zinc finger family protein
          Length = 435

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = +3

Query: 309 KPTLNGQSPDAPDAYPNCANEPYCAATAVQN 401
           K TL GQ   A   Y N    P+CA   V+N
Sbjct: 213 KSTLKGQLLAAVGRYANNGMYPFCAVVDVEN 243


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,869,442
Number of Sequences: 28952
Number of extensions: 177201
Number of successful extensions: 440
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 431
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 440
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 645327280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)