Samia BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_G08
         (432 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A2DQF5 Cluster: Beige/BEACH domain containing protein; ...    33   1.9  
UniRef50_Q319T3 Cluster: Pyruvate dehydrogenase; n=1; Prochloroc...    33   2.6  
UniRef50_Q8ILD1 Cluster: Putative uncharacterized protein; n=1; ...    32   5.9  
UniRef50_Q4N452 Cluster: Putative uncharacterized protein; n=1; ...    32   5.9  
UniRef50_Q4HDN6 Cluster: DNA repair protein RAD50, putative; n=1...    31   7.8  
UniRef50_Q58266 Cluster: Uncharacterized protein MJ0856; n=1; Me...    31   7.8  
UniRef50_P47907 Cluster: Mitochondrial ribosomal protein S5; n=2...    31   7.8  

>UniRef50_A2DQF5 Cluster: Beige/BEACH domain containing protein;
           n=3; Trichomonas vaginalis G3|Rep: Beige/BEACH domain
           containing protein - Trichomonas vaginalis G3
          Length = 2730

 Score = 33.5 bits (73), Expect = 1.9
 Identities = 19/75 (25%), Positives = 37/75 (49%)
 Frame = +3

Query: 156 SYYIESATLSRADLHHRYLDRIINLIRKLLKKTKYPNTKSIYNKVFPI*KNNNMQASPFV 335
           S+YI++ ++ ++DL    L ++I    + +KK +     + Y  +F I   N+     FV
Sbjct: 736 SFYIKALSIIQSDLQKSKLFKLIFRDDEEMKKPRLIQNSTPYPSLFLIMSRNDNDLKDFV 795

Query: 336 SVSFRALFTIISSLY 380
             +F  +   + SLY
Sbjct: 796 DFTFNCMKDNVQSLY 810


>UniRef50_Q319T3 Cluster: Pyruvate dehydrogenase; n=1;
           Prochlorococcus marinus str. MIT 9312|Rep: Pyruvate
           dehydrogenase - Prochlorococcus marinus (strain MIT
           9312)
          Length = 329

 Score = 33.1 bits (72), Expect = 2.6
 Identities = 14/25 (56%), Positives = 18/25 (72%)
 Frame = +3

Query: 237 KLLKKTKYPNTKSIYNKVFPI*KNN 311
           K+L+K  YPN K I NK+F I +NN
Sbjct: 304 KVLEKEYYPNEKKILNKIFKIFENN 328


>UniRef50_Q8ILD1 Cluster: Putative uncharacterized protein; n=1;
            Plasmodium falciparum 3D7|Rep: Putative uncharacterized
            protein - Plasmodium falciparum (isolate 3D7)
          Length = 1267

 Score = 31.9 bits (69), Expect = 5.9
 Identities = 21/68 (30%), Positives = 34/68 (50%)
 Frame = +3

Query: 138  NKIQLYSYYIESATLSRADLHHRYLDRIINLIRKLLKKTKYPNTKSIYNKVFPI*KNNNM 317
            N I  Y  Y E   + +   +   ++  I+ I K LK    P  K+ YNK+  I KNN +
Sbjct: 1004 NGIHDYKAYYEFKEMYQQKNYEHIINNFIHSIVKQLK----PYKKNYYNKIIKIIKNNKL 1059

Query: 318  QASPFVSV 341
            Q + F+++
Sbjct: 1060 Q-NVFINI 1066


>UniRef50_Q4N452 Cluster: Putative uncharacterized protein; n=1;
            Theileria parva|Rep: Putative uncharacterized protein -
            Theileria parva
          Length = 2089

 Score = 31.9 bits (69), Expect = 5.9
 Identities = 21/62 (33%), Positives = 30/62 (48%)
 Frame = +3

Query: 138  NKIQLYSYYIESATLSRADLHHRYLDRIINLIRKLLKKTKYPNTKSIYNKVFPI*KNNNM 317
            NKI +  YYI    L  + +H    +  I ++ KLL+  KYPN    Y   F   KNN +
Sbjct: 1435 NKIPILFYYIVINQLIGSTVHKLLNNISITVLSKLLQ--KYPNVVLWYITYFKYSKNNTL 1492

Query: 318  QA 323
             +
Sbjct: 1493 NS 1494


>UniRef50_Q4HDN6 Cluster: DNA repair protein RAD50, putative; n=1;
           Campylobacter coli RM2228|Rep: DNA repair protein RAD50,
           putative - Campylobacter coli RM2228
          Length = 201

 Score = 31.5 bits (68), Expect = 7.8
 Identities = 20/55 (36%), Positives = 29/55 (52%)
 Frame = +3

Query: 156 SYYIESATLSRADLHHRYLDRIINLIRKLLKKTKYPNTKSIYNKVFPI*KNNNMQ 320
           SYYI S  +   D  ++YLD+I + I  L+K      T S YN++    K +N Q
Sbjct: 60  SYYITSFNVDNFDEKNQYLDKIPDPILNLIKDENNKLT-SFYNEMRKRIKEDNFQ 113


>UniRef50_Q58266 Cluster: Uncharacterized protein MJ0856; n=1;
           Methanocaldococcus jannaschii|Rep: Uncharacterized
           protein MJ0856 - Methanococcus jannaschii
          Length = 181

 Score = 31.5 bits (68), Expect = 7.8
 Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
 Frame = +3

Query: 162 YIESATLSRAD--LHHRYLDRIINLIRKLLKKTKYPNTKSIYNK 287
           Y++S   S  D  L  +YLDR+I  IR  +   K+P +KS YN+
Sbjct: 72  YVQSQLFSLCDTELTEKYLDRMIKAIRGEI-NAKFPVSKSNYNR 114


>UniRef50_P47907 Cluster: Mitochondrial ribosomal protein S5; n=2;
           Penicillium|Rep: Mitochondrial ribosomal protein S5 -
           Penicillium urticae
          Length = 399

 Score = 31.5 bits (68), Expect = 7.8
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = +3

Query: 141 KIQLYSYYIESATLSRADLHHRYLDRIINLIRKLLKK 251
           +++ Y YY +   +++A   + YL  +INL+R +  K
Sbjct: 194 RLKFYMYYKQMLYINKAKFENTYLQGLINLVRNIFNK 230


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 322,197,267
Number of Sequences: 1657284
Number of extensions: 4957001
Number of successful extensions: 10578
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10342
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10575
length of database: 575,637,011
effective HSP length: 93
effective length of database: 421,509,599
effective search space used: 21075479950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)