Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_G08
         (432 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual    28   0.70 
SPBC20F10.06 |mad2||spindle checkpoint protein Mad2|Schizosaccha...    26   2.2  
SPAC869.01 |||amidase |Schizosaccharomyces pombe|chr 1|||Manual        25   6.6  
SPBC336.12c |cdc10||MBF transcription factor complex subunit Cdc...    24   8.7  

>SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 426

 Score = 27.9 bits (59), Expect = 0.70
 Identities = 11/22 (50%), Positives = 17/22 (77%)
 Frame = -3

Query: 151 NCILFVYGVYTINQFNVVGTYL 86
           +CILFV+ VYT+ Q  + G++L
Sbjct: 402 HCILFVWIVYTVIQAGLYGSFL 423


>SPBC20F10.06 |mad2||spindle checkpoint protein
           Mad2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 203

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = -3

Query: 196 KSARDSVADSM*YEYNCILFVYGVYTINQFNVVGTY 89
           K +   V++   Y  N ILF  G+Y    F VV  Y
Sbjct: 13  KGSSKLVSEFFEYAVNSILFQRGIYPAEDFKVVRKY 48


>SPAC869.01 |||amidase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 583

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +3

Query: 162 YIESATLSRADLHHRYLDRIINL 230
           Y+E+  L+  D+ H YLDR + +
Sbjct: 77  YMENGILTSTDIVHCYLDRYLQV 99


>SPBC336.12c |cdc10||MBF transcription factor complex subunit
           Cdc10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 767

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = +3

Query: 234 RKLLKKTKYPN-TKSIYNKVFPI*KNNNMQASPFVSVSFRALFTIISS 374
           R  L+   + N +KS  N V  I   NNMQ+SP  S SF    T I S
Sbjct: 195 RSPLRNHNFSNPSKSSKNGVHTI---NNMQSSPSPSSSFLLPLTQIDS 239


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,414,816
Number of Sequences: 5004
Number of extensions: 23547
Number of successful extensions: 45
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 154067960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)