Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_G08
         (432 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0574 - 30086264-30086367,30087653-30087746,30088293-300885...    27   6.5  

>02_05_0574 -
           30086264-30086367,30087653-30087746,30088293-30088555,
           30089122-30089202,30089293-30089422,30089545-30089730,
           30090013-30090138
          Length = 327

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = +2

Query: 101 NIELINSIDTINKQDTIIFVLHRICYAITGRLTSQ 205
           + E ++  D  N+++TI++ LH  C   + RLT+Q
Sbjct: 142 HFEYMSENDVPNERNTIVYKLHVSCKKGSPRLTAQ 176


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,297,653
Number of Sequences: 37544
Number of extensions: 113233
Number of successful extensions: 151
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 814473264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)