Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_G08
         (432 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21430| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.6  
SB_26764| Best HMM Match : ANF_receptor (HMM E-Value=0.001)            29   2.2  

>SB_21430| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 815

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 18/77 (23%), Positives = 33/77 (42%), Gaps = 3/77 (3%)
 Frame = +3

Query: 144 IQLYSYYIESATLSRAD---LHHRYLDRIINLIRKLLKKTKYPNTKSIYNKVFPI*KNNN 314
           I+ + Y +ES  L R+    L   + D I+ L +      KY    S Y     + +  +
Sbjct: 183 IKKHFYILESIALVRSFTVCLELDFQDLILQLFKLFFSVVKYSQNPSAYRIASNLVEKTS 242

Query: 315 MQASPFVSVSFRALFTI 365
               PF+ + F ++ T+
Sbjct: 243 SSIEPFIQMFFNSVLTL 259


>SB_26764| Best HMM Match : ANF_receptor (HMM E-Value=0.001)
          Length = 342

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +2

Query: 101 NIELINSIDTINKQDTIIFVLHRICYAITGRLTSQ 205
           N +L+N +  I + +T++ VLH  C+A   +L  Q
Sbjct: 202 NTDLLNKLGEIKRSETVVIVLH--CFAEEAKLILQ 234


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,133,006
Number of Sequences: 59808
Number of extensions: 161058
Number of successful extensions: 312
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 254
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 312
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 822495283
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)