Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_G08
         (432 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U02289-1|AAA18934.1| 1439|Caenorhabditis elegans GTPase-activati...    27   5.8  
L16687-1|AAK71357.2| 1317|Caenorhabditis elegans Hypothetical pr...    27   5.8  
AL031627-21|CAA20970.1|  326|Caenorhabditis elegans Hypothetical...    27   5.8  

>U02289-1|AAA18934.1| 1439|Caenorhabditis elegans GTPase-activating
           protein protein.
          Length = 1439

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = +3

Query: 147 QLYSYYIESATLSRADLHHRYLDRIINLIRKL 242
           +LY ++I++   +R   HH  L ++ NL+RKL
Sbjct: 879 KLYPFFIDA---NRISTHHNRLHKLRNLLRKL 907


>L16687-1|AAK71357.2| 1317|Caenorhabditis elegans Hypothetical
           protein C04D8.1 protein.
          Length = 1317

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = +3

Query: 147 QLYSYYIESATLSRADLHHRYLDRIINLIRKL 242
           +LY ++I++   +R   HH  L ++ NL+RKL
Sbjct: 757 KLYPFFIDA---NRISTHHNRLHKLRNLLRKL 785


>AL031627-21|CAA20970.1|  326|Caenorhabditis elegans Hypothetical
           protein Y102A5C.33 protein.
          Length = 326

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = -2

Query: 338 RHKRRSLHIVIFLNRKYFVIYRLCVWIFRFF 246
           RHK ++LHIV    + ++ I +L  ++F FF
Sbjct: 44  RHKEKNLHIV----QSFYKIVKLSYFVFTFF 70


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,735,509
Number of Sequences: 27780
Number of extensions: 126017
Number of successful extensions: 245
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 244
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 245
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 724655464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)