Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_G08
         (432 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g26590.1 68414.m03239 zinc finger (C2H2 type) family protein ...    27   5.5  
At3g48110.2 68416.m05246 aminoacyl-t-RNA synthetase, putative si...    27   7.2  
At3g48110.1 68416.m05245 aminoacyl-t-RNA synthetase, putative si...    27   7.2  

>At1g26590.1 68414.m03239 zinc finger (C2H2 type) family protein
           contains Pfam domain, PF00096: Zinc finger, C2H2 type
          Length = 361

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 10/34 (29%), Positives = 21/34 (61%)
 Frame = +3

Query: 138 NKIQLYSYYIESATLSRADLHHRYLDRIINLIRK 239
           +K  L+SY  +S   + + +HHR+ D   ++++K
Sbjct: 271 SKRALFSYETDSCADTNSKIHHRFKDSKSSMVKK 304


>At3g48110.2 68416.m05246 aminoacyl-t-RNA synthetase, putative
           similar to aminoacyl-t-RNA synthetase GI:2654226 from
           [Arabidopsis thaliana]; contains Pfam profiles: PF02092
           glycyl-tRNA synthetase beta subunit,PF02091 glycyl-tRNA
           synthetase alpha subunit
          Length = 1063

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +3

Query: 138 NKIQLYSYYIESATLSRADLHHRYLD 215
           N+ ++ SYY+E A++ R   H  Y D
Sbjct: 262 NEKEMSSYYLEHASVDRLQKHFDYFD 287


>At3g48110.1 68416.m05245 aminoacyl-t-RNA synthetase, putative
           similar to aminoacyl-t-RNA synthetase GI:2654226 from
           [Arabidopsis thaliana]; contains Pfam profiles: PF02092
           glycyl-tRNA synthetase beta subunit,PF02091 glycyl-tRNA
           synthetase alpha subunit
          Length = 1064

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +3

Query: 138 NKIQLYSYYIESATLSRADLHHRYLD 215
           N+ ++ SYY+E A++ R   H  Y D
Sbjct: 262 NEKEMSSYYLEHASVDRLQKHFDYFD 287


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,957,119
Number of Sequences: 28952
Number of extensions: 105205
Number of successful extensions: 165
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 685039728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)