BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= S06A01NCLL0001_G08 (432 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At1g26590.1 68414.m03239 zinc finger (C2H2 type) family protein ... 27 5.5 At3g48110.2 68416.m05246 aminoacyl-t-RNA synthetase, putative si... 27 7.2 At3g48110.1 68416.m05245 aminoacyl-t-RNA synthetase, putative si... 27 7.2 >At1g26590.1 68414.m03239 zinc finger (C2H2 type) family protein contains Pfam domain, PF00096: Zinc finger, C2H2 type Length = 361 Score = 27.1 bits (57), Expect = 5.5 Identities = 10/34 (29%), Positives = 21/34 (61%) Frame = +3 Query: 138 NKIQLYSYYIESATLSRADLHHRYLDRIINLIRK 239 +K L+SY +S + + +HHR+ D ++++K Sbjct: 271 SKRALFSYETDSCADTNSKIHHRFKDSKSSMVKK 304 >At3g48110.2 68416.m05246 aminoacyl-t-RNA synthetase, putative similar to aminoacyl-t-RNA synthetase GI:2654226 from [Arabidopsis thaliana]; contains Pfam profiles: PF02092 glycyl-tRNA synthetase beta subunit,PF02091 glycyl-tRNA synthetase alpha subunit Length = 1063 Score = 26.6 bits (56), Expect = 7.2 Identities = 10/26 (38%), Positives = 16/26 (61%) Frame = +3 Query: 138 NKIQLYSYYIESATLSRADLHHRYLD 215 N+ ++ SYY+E A++ R H Y D Sbjct: 262 NEKEMSSYYLEHASVDRLQKHFDYFD 287 >At3g48110.1 68416.m05245 aminoacyl-t-RNA synthetase, putative similar to aminoacyl-t-RNA synthetase GI:2654226 from [Arabidopsis thaliana]; contains Pfam profiles: PF02092 glycyl-tRNA synthetase beta subunit,PF02091 glycyl-tRNA synthetase alpha subunit Length = 1064 Score = 26.6 bits (56), Expect = 7.2 Identities = 10/26 (38%), Positives = 16/26 (61%) Frame = +3 Query: 138 NKIQLYSYYIESATLSRADLHHRYLD 215 N+ ++ SYY+E A++ R H Y D Sbjct: 262 NEKEMSSYYLEHASVDRLQKHFDYFD 287 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 6,957,119 Number of Sequences: 28952 Number of extensions: 105205 Number of successful extensions: 165 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 164 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 165 length of database: 12,070,560 effective HSP length: 74 effective length of database: 9,928,112 effective search space used: 685039728 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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