Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_G07
         (461 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu...    26   2.4  
SPAC4G9.13c |vps26|pep8|retromer complex subunit Vps26|Schizosac...    25   5.6  
SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|ch...    25   7.4  
SPBC29A3.17 |gef3||RhoGEF Gef3|Schizosaccharomyces pombe|chr 2||...    24   9.8  

>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1405

 Score = 26.2 bits (55), Expect = 2.4
 Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = -2

Query: 430  TP-QRLILVIPQQRLRILS*SPAILLDPPHSYFYVNQVLVMIRYGGR 293
            TP QRL   I QQ L++ + S    L    S FY   + V+I Y GR
Sbjct: 915  TPTQRLQWDIQQQALKLTANSMYGCLGYTKSRFYARPLAVLITYKGR 961


>SPAC4G9.13c |vps26|pep8|retromer complex subunit
           Vps26|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 298

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = -2

Query: 340 YFYVNQVLVMIRYGGRRRRDVIAVAPNAYINSRQVIIFILPD 215
           YF + ++ V        RR+ I  +PN Y NS  +  F + D
Sbjct: 192 YFILVRIKVQRMEVSIIRRETIGTSPNQYSNSETITRFQIMD 233


>SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 870

 Score = 24.6 bits (51), Expect = 7.4
 Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 12/66 (18%)
 Frame = +2

Query: 8   GRS*RNVAVSATPARYVRSTRVRRQTKT-----------ISDMSCAPSSTVFRLTILILT 154
           G++ + VA   +P+R+   ++ ++QTK+            SD SCA  +T  R+    + 
Sbjct: 642 GKALQRVASVTSPSRHNSDSKEKKQTKSPSLVKTLKEMHSSDQSCADCNTTARVEWCAIN 701

Query: 155 F-IVTC 169
           F +V C
Sbjct: 702 FPVVLC 707


>SPBC29A3.17 |gef3||RhoGEF Gef3|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 525

 Score = 24.2 bits (50), Expect = 9.8
 Identities = 9/22 (40%), Positives = 17/22 (77%)
 Frame = -2

Query: 295 RRRRDVIAVAPNAYINSRQVII 230
           +RRRD+I  A ++  NS++V++
Sbjct: 269 KRRRDIIITALDSVSNSQEVLL 290


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,561,480
Number of Sequences: 5004
Number of extensions: 25881
Number of successful extensions: 69
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 174340060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)