Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_G07
(461 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0604 + 30536172-30537143 28 4.2
09_02_0587 - 10948888-10949124,10949281-10949393,10949830-109502... 27 5.6
08_01_0433 + 3794440-3794948,3795696-3796707 27 5.6
04_04_0418 + 25077748-25078101,25079413-25079538,25080683-250815... 27 5.6
01_06_1086 - 34421837-34422311,34422426-34422612,34423162-344232... 27 5.6
09_03_0005 + 11411828-11411894,11412122-11412677,11413424-11413433 27 7.3
09_02_0592 - 11006346-11006758,11012943-11013036 27 7.3
03_06_0327 - 33158131-33158315,33158586-33158639,33159149-331591... 27 7.3
08_01_0434 + 3809681-3810016,3810039-3811100 27 9.7
01_06_1089 - 34451982-34452670,34452755-34452814,34453287-344533... 27 9.7
01_06_1088 - 34439311-34439987,34440080-34440136,34442790-344429... 27 9.7
>01_06_0604 + 30536172-30537143
Length = 323
Score = 27.9 bits (59), Expect = 4.2
Identities = 15/56 (26%), Positives = 22/56 (39%)
Frame = -2
Query: 193 PYDTGDESARHXXXXXXXXXXXXSARWRTTHITNCFCLPTHSGRTYITRRRSTNSY 26
PY+TG+ R ARW+ + L THS R ++ S + Y
Sbjct: 125 PYETGEWEGRKCPPSTPFAAAPPLARWKERASVSSRRLSTHSSRRLMSSSSSDDEY 180
>09_02_0587 -
10948888-10949124,10949281-10949393,10949830-10950293,
10951223-10951766,10951902-10951971
Length = 475
Score = 27.5 bits (58), Expect = 5.6
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -2
Query: 100 ITNCFCLPTHSGRTYITRRRS 38
+ NC+ LPT +G Y+ R RS
Sbjct: 86 VRNCYALPTVAGAKYLVRVRS 106
>08_01_0433 + 3794440-3794948,3795696-3796707
Length = 506
Score = 27.5 bits (58), Expect = 5.6
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = -2
Query: 370 PAILLDPPHSYFYVNQVLVMIRYGGRRRRDVIAV 269
PA+ PP S + NQ + + GG V+AV
Sbjct: 208 PAMTFYPPFSKLFANQKMEFLLLGGNHSNAVVAV 241
>04_04_0418 +
25077748-25078101,25079413-25079538,25080683-25081593,
25081970-25082453
Length = 624
Score = 27.5 bits (58), Expect = 5.6
Identities = 14/58 (24%), Positives = 25/58 (43%)
Frame = +2
Query: 35 SATPARYVRSTRVRRQTKTISDMSCAPSSTVFRLTILILTFIVTCTFIASVVWLLQTR 208
SA A Y+ +Q + + S FRLT + + C + SVV++ + +
Sbjct: 546 SALLAGYIYDKEAAKQQPGVLEPSTCLGPDCFRLTFYVCAIVCCCGTLVSVVFIARIK 603
>01_06_1086 -
34421837-34422311,34422426-34422612,34423162-34423291,
34423485-34423720,34423804-34423961,34424048-34424128,
34424216-34424281,34424364-34424432,34424722-34424866,
34425645-34426138,34426244-34426811,34429529-34429574
Length = 884
Score = 27.5 bits (58), Expect = 5.6
Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = -2
Query: 94 NCFCLPTHSGRTYITRRRST-NSYVALRAS 8
NC+ +P+ SG+ Y+ R T +Y LR+S
Sbjct: 79 NCYTIPSTSGKKYLIRTTFTYGNYDGLRSS 108
>09_03_0005 + 11411828-11411894,11412122-11412677,11413424-11413433
Length = 210
Score = 27.1 bits (57), Expect = 7.3
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = -2
Query: 100 ITNCFCLPTHSGRTYITR 47
+ NC+ LPT++G Y+ R
Sbjct: 85 VRNCYALPTNAGNKYLVR 102
>09_02_0592 - 11006346-11006758,11012943-11013036
Length = 168
Score = 27.1 bits (57), Expect = 7.3
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = -2
Query: 94 NCFCLPTHSGRTYITR 47
NC+ LPTH G Y+ R
Sbjct: 100 NCYSLPTHIGSKYLVR 115
>03_06_0327 -
33158131-33158315,33158586-33158639,33159149-33159180,
33159275-33159369,33159466-33159539,33159643-33159778,
33159874-33159937,33160017-33160079,33160160-33160299,
33160487-33160627,33160747-33160868,33160947-33161112,
33161194-33161313,33161580-33161651,33161787-33161843,
33162036-33162152,33162231-33162369,33162794-33162900,
33162972-33163081,33163172-33163305,33163397-33163546,
33163635-33163840,33166123-33166818
Length = 1059
Score = 27.1 bits (57), Expect = 7.3
Identities = 12/29 (41%), Positives = 21/29 (72%)
Frame = -3
Query: 168 HVTMKVNMRIVNRNTVLDGAQLISLIVFV 82
+V +K+N+++ RNTVL+ A + + I FV
Sbjct: 724 NVALKINVKVGGRNTVLERAFIRNGIPFV 752
>08_01_0434 + 3809681-3810016,3810039-3811100
Length = 465
Score = 26.6 bits (56), Expect = 9.7
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = -2
Query: 370 PAILLDPPHSYFYVNQVLVMIRYGGRRRRDVIAV 269
PA+ PP S + NQ + + GG V+AV
Sbjct: 160 PAMTFYPPFSTLFGNQKMEFLLLGGNHNNAVVAV 193
>01_06_1089 -
34451982-34452670,34452755-34452814,34453287-34453352,
34454055-34454253,34454470-34454719,34454830-34454898,
34455733-34455804,34456027-34456168,34456544-34457064,
34457166-34457739,34459164-34459269
Length = 915
Score = 26.6 bits (56), Expect = 9.7
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = -2
Query: 94 NCFCLPTHSGRTYITRRRST-NSYVALRAS 8
NC+ LPT+S + Y+ R T +Y L +S
Sbjct: 101 NCYTLPTNSSKKYLIRATFTYGNYDGLNSS 130
>01_06_1088 -
34439311-34439987,34440080-34440136,34442790-34442919,
34443499-34443740,34443857-34444008,34444381-34444461,
34444547-34444612,34444692-34444763,34444843-34444984,
34445146-34445645,34446625-34447192,34447248-34447257
Length = 898
Score = 26.6 bits (56), Expect = 9.7
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = -2
Query: 94 NCFCLPTHSGRTYITRRRST-NSYVALRAS 8
NC+ LPT+S + Y+ R T +Y L +S
Sbjct: 67 NCYTLPTNSSKKYLIRATFTYGNYDGLNSS 96
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,014,090
Number of Sequences: 37544
Number of extensions: 161256
Number of successful extensions: 435
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 431
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 434
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 919380308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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