Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_G07
         (461 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49296| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.27 
SB_36326| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.61 
SB_24335| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.9  
SB_531| Best HMM Match : wnt (HMM E-Value=0)                           29   1.9  
SB_47598| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.7  
SB_43343| Best HMM Match : fn3 (HMM E-Value=3.4e-39)                   27   7.6  

>SB_49296| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 966

 Score = 31.9 bits (69), Expect = 0.27
 Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
 Frame = +2

Query: 5   DGRS*RNVAVSATP-ARYVRSTRVRRQTKTISDMSCAPSSTVFRLTILILTFIVTCTFIA 181
           +GR  R  A  AT  A  V ST     + ++ +     +STV RLT+  L F++      
Sbjct: 588 EGRGKRREAEMATDEAMIVNSTMPTTTSASVVEAKEPLASTVIRLTLSCLVFLLNVVGNT 647

Query: 182 SVVWLLQTRANVGQYENYY 238
            V  +++    +  + NYY
Sbjct: 648 MVCIVVKRNRKLRSFRNYY 666


>SB_36326| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 376

 Score = 30.7 bits (66), Expect = 0.61
 Identities = 18/58 (31%), Positives = 30/58 (51%)
 Frame = +2

Query: 83  TKTISDMSCAPSSTVFRLTILILTFIVTCTFIASVVWLLQTRANVGQYENYYLSRINI 256
           +KT   M  +    +F+L    + F+V  T  + VVWL+  R    +Y NY+L+ + I
Sbjct: 40  SKTRLRMRDSDGLRIFKLLCYAIVFLVGATGNSMVVWLVAKRRLRARY-NYFLANLAI 96


>SB_24335| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 166

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -3

Query: 207 LVCNNHTTLAMKVHVTMKVNM 145
           LVCNN T LA +VH  + V++
Sbjct: 101 LVCNNETVLAEEVHAVLSVDL 121


>SB_531| Best HMM Match : wnt (HMM E-Value=0)
          Length = 646

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 18/59 (30%), Positives = 29/59 (49%)
 Frame = +2

Query: 77  RQTKTISDMSCAPSSTVFRLTILILTFIVTCTFIASVVWLLQTRANVGQYENYYLSRIN 253
           R+  ++    C   S +  L I+ILT +V  + + S  WL  + A  G   N +LS+ N
Sbjct: 222 RRKPSLQRSVCCSRSIMIALKIVILTQLVMASLVYSSQWL--SLALTGSNPNRFLSKKN 278


>SB_47598| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2332

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 15/48 (31%), Positives = 27/48 (56%)
 Frame = +2

Query: 311 HYKDLINIEIAMRRVEENSRRLREYTKSLLWDNKDKSLWCVLFKDSER 454
           H+ DL++ E    RVEE  RR + ++K    +N+ + L   +F+  +R
Sbjct: 594 HFADLLSPEEMNERVEEEERRSKAFSKLQERENELQKLRDGVFEFQKR 641


>SB_43343| Best HMM Match : fn3 (HMM E-Value=3.4e-39)
          Length = 2865

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 9/33 (27%), Positives = 19/33 (57%)
 Frame = +2

Query: 140  ILILTFIVTCTFIASVVWLLQTRANVGQYENYY 238
            +++L F + C     V+WL++ R+N  Q+   +
Sbjct: 2217 VVVLAFAMAC-LAGIVIWLIEMRSNADQFPKIF 2248


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,948,817
Number of Sequences: 59808
Number of extensions: 202345
Number of successful extensions: 597
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 555
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 597
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 945255773
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)