Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_G07
         (461 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z32681-3|CAD88217.1|  685|Caenorhabditis elegans Hypothetical pr...    30   0.70 
Z32681-2|CAA83607.1|  687|Caenorhabditis elegans Hypothetical pr...    30   0.70 
AF173373-1|AAD51973.1|  687|Caenorhabditis elegans transmembrane...    30   0.70 
AF039053-2|AAC25877.3|  294|Caenorhabditis elegans Serpentine re...    30   0.93 
Z68316-2|CAA92681.1|  352|Caenorhabditis elegans Hypothetical pr...    27   6.5  
AF043699-4|AAB97568.1|  610|Caenorhabditis elegans Serotonin/oct...    27   6.5  

>Z32681-3|CAD88217.1|  685|Caenorhabditis elegans Hypothetical
           protein F56F3.2b protein.
          Length = 685

 Score = 30.3 bits (65), Expect = 0.70
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = -2

Query: 100 ITNCFCLPTHSGRTYITRRRSTNSYV 23
           I +CF +P ++ RT+ TRR S N +V
Sbjct: 246 ILSCFSIPDNAKRTFSTRRESPNLHV 271


>Z32681-2|CAA83607.1|  687|Caenorhabditis elegans Hypothetical
           protein F56F3.2a protein.
          Length = 687

 Score = 30.3 bits (65), Expect = 0.70
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = -2

Query: 100 ITNCFCLPTHSGRTYITRRRSTNSYV 23
           I +CF +P ++ RT+ TRR S N +V
Sbjct: 246 ILSCFSIPDNAKRTFSTRRESPNLHV 271


>AF173373-1|AAD51973.1|  687|Caenorhabditis elegans transmembrane
           protein NDG-4 protein.
          Length = 687

 Score = 30.3 bits (65), Expect = 0.70
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = -2

Query: 100 ITNCFCLPTHSGRTYITRRRSTNSYV 23
           I +CF +P ++ RT+ TRR S N +V
Sbjct: 246 ILSCFSIPDNAKRTFSTRRESPNLHV 271


>AF039053-2|AAC25877.3|  294|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 20 protein.
          Length = 294

 Score = 29.9 bits (64), Expect = 0.93
 Identities = 13/40 (32%), Positives = 27/40 (67%)
 Frame = +2

Query: 131 RLTILILTFIVTCTFIASVVWLLQTRANVGQYENYYLSRI 250
           R+T+  L F+ +  F+AS +++L+   NVG+ E + ++R+
Sbjct: 174 RMTVFALMFLFSI-FLASKLFMLRKSKNVGKNEQFRMNRL 212


>Z68316-2|CAA92681.1|  352|Caenorhabditis elegans Hypothetical
           protein K08E4.3 protein.
          Length = 352

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
 Frame = +2

Query: 2   HDGRS*RNVAVSATPARYVRSTRVRRQT-KTISDMSCAPSSTVFRL-TILILTFIVTCTF 175
           H       V ++A P     S  V R   + +S +S   S ++  + T LI+ FI+TC  
Sbjct: 8   HSNNDSSPVPITAVPYASASSFCVERDDHRPLSSISRDLSHSILLIFTYLIVKFIITCHL 67

Query: 176 IASVVWLLQTRANV 217
           ++ +  LL+   ++
Sbjct: 68  LSDMYTLLRILTSI 81


>AF043699-4|AAB97568.1|  610|Caenorhabditis elegans
           Serotonin/octopamine receptor familyprotein 3 protein.
          Length = 610

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -2

Query: 97  TNCFCLPTHSGRTYITRRRSTNSYVAL 17
           T C C P ++GR Y+    S++ Y+ +
Sbjct: 206 TPCRCTPANAGRVYVVFSASSSFYIPM 232


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,718,336
Number of Sequences: 27780
Number of extensions: 146776
Number of successful extensions: 473
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 467
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 473
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 818426686
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)