Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_G07
         (461 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g26540.1 68417.m03823 protein kinase family protein Three fal...    27   8.2  
At4g13420.1 68417.m02095 potassium transporter (HAK5) identical ...    27   8.2  

>At4g26540.1 68417.m03823 protein kinase family protein Three false
           introns were added with non-consensus splice sites to
           circumenvent frameshifts likely due to sequencing
           errors; this is extremely unusual and is under
           investigation.
          Length = 1089

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +2

Query: 116 SSTVFRLTILILTFIVTCTFIASVVWLLQTRA 211
           +S+V RLTILIL  +     + +V  L++ RA
Sbjct: 695 NSSVVRLTILILVVVTAVLVLMAVYTLVRARA 726


>At4g13420.1 68417.m02095 potassium transporter (HAK5) identical to
           K+ transporter HAK5 [Arabidopsis thaliana]
           gi|7108597|gb|AAF36490; similar to high-affinity
           potassium transporter AtKUP1p [Arabidopsis thaliana]
           gi|2688979|gb|AAB88901; KUP/HAK/KT Transporter family
           member, PMID:11500563
          Length = 785

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +2

Query: 122 TVFRLTILILTFIVTCTFIASVVWLLQTRANVGQYENYYLSRI 250
           TV  +T L++T I+   +  ++VW+       G  E  YLS +
Sbjct: 456 TVMVITTLMVTLIMLVIWKTNIVWIAIFLVVFGSIEMLYLSSV 498


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,017,155
Number of Sequences: 28952
Number of extensions: 128978
Number of successful extensions: 347
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 346
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 347
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 772134480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)