Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_G06
(485 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28 |Schizo... 30 0.16
SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce... 30 0.16
SPBC12D12.07c |trx2||mitochondrial thioredoxin Trx2|Schizosaccha... 28 0.65
SPAC3G9.14 |sak1||transcriptional repressor Sak1|Schizosaccharom... 27 2.0
SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces p... 27 2.0
SPAC3C7.10 |pex13||peroxin-13|Schizosaccharomyces pombe|chr 1|||... 26 2.6
SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|c... 26 2.6
SPAC57A10.07 |||conserved protein |Schizosaccharomyces pombe|chr... 26 3.5
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc... 26 3.5
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 25 4.6
SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase |Schi... 25 4.6
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 25 6.1
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 25 6.1
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p... 25 8.0
SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces p... 25 8.0
>SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1055
Score = 30.3 bits (65), Expect = 0.16
Identities = 21/86 (24%), Positives = 39/86 (45%), Gaps = 1/86 (1%)
Frame = +2
Query: 104 IEMPLLLKLNEQ-NPLCRFKAVGYFKLSRREDKDGHVAMLFNKSEQDIKNNQQAFITSLH 280
+E+ L+ +E +P+ + GYF + R D+ G S + +K+NQ +I
Sbjct: 944 VEIELVTNSSESLDPIKKAITAGYFSNAARLDRSGD-------SYRTVKSNQTVYIHPSS 996
Query: 281 SLLGNKPNLAVNIESIKAVSESKSQV 358
S+ KP + + E + E Q+
Sbjct: 997 SVAEKKPKVIIYFELVLTTKEYCRQI 1022
>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 681
Score = 30.3 bits (65), Expect = 0.16
Identities = 22/53 (41%), Positives = 26/53 (49%)
Frame = +2
Query: 272 SLHSLLGNKPNLAVNIESIKAVSESKSQVVIYVVDKGANGTHISASELAAFLN 430
SL+SL+GNK N S KA SESKSQ G N A L + +N
Sbjct: 543 SLNSLVGNKSE---NSSSSKAKSESKSQGNYVCTFAGCNKRFTRAYNLKSHMN 592
>SPBC12D12.07c |trx2||mitochondrial thioredoxin
Trx2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 121
Score = 28.3 bits (60), Expect = 0.65
Identities = 24/63 (38%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
Frame = +2
Query: 113 PLLLKLNEQNPLCRFKAVGYFKLSRREDKDGHVAM----LFNKSEQDIKNNQQAFITSLH 280
P L KL+EQN F AV K S K+G A+ LF K Q++ A + +L
Sbjct: 55 PFLEKLSEQNQKASFIAVNADKFSDIAQKNGVYALPTMVLFRKG-QELDRIVGADVKTLS 113
Query: 281 SLL 289
SLL
Sbjct: 114 SLL 116
>SPAC3G9.14 |sak1||transcriptional repressor
Sak1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 766
Score = 26.6 bits (56), Expect = 2.0
Identities = 27/78 (34%), Positives = 40/78 (51%), Gaps = 3/78 (3%)
Frame = -3
Query: 384 APLSTTYITTWLLLSDTALIDSMLTAKFGLFPRRL*RDVMKAC*LFLIS--CSDLLNNMA 211
A LS+ Y T W+ SDT + +L LFP L V+ L L+ +L+N+++
Sbjct: 433 ALLSSPYFTKWIERSDTVMYREILKL---LFPMTL--QVVPPPVLVLLRHLAENLVNHIS 487
Query: 210 TC-PSLSSRLLSLKYPTA 160
+ S SS LL +K TA
Sbjct: 488 SIYASHSSCLLQVKSETA 505
>SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 526
Score = 26.6 bits (56), Expect = 2.0
Identities = 9/25 (36%), Positives = 14/25 (56%)
Frame = +2
Query: 8 DLIVAYSVMKGIRCWRNGTCYRPNG 82
D ++ Y V KG+ W C+ P+G
Sbjct: 385 DSVLKYPVPKGVPPWAMSACWSPDG 409
>SPAC3C7.10 |pex13||peroxin-13|Schizosaccharomyces pombe|chr
1|||Manual
Length = 288
Score = 26.2 bits (55), Expect = 2.6
Identities = 16/63 (25%), Positives = 31/63 (49%)
Frame = +2
Query: 170 YFKLSRREDKDGHVAMLFNKSEQDIKNNQQAFITSLHSLLGNKPNLAVNIESIKAVSESK 349
+FK S+ ++ + +F K E + KN+ + ++SL +LG I K + E +
Sbjct: 150 FFKHSKIDEMNSQEYDVFEKEEGNHKNSIYSIVSSLAIILGLVGLPYAIIRLFKNIYEKE 209
Query: 350 SQV 358
Q+
Sbjct: 210 KQI 212
>SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1316
Score = 26.2 bits (55), Expect = 2.6
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = -2
Query: 403 GYMGSI-RSLIDHVYYHLAFTLGHRFNR 323
G M ++ R ++D Y A+T GH FNR
Sbjct: 1071 GRMANLWRFVLDVTYPQAAYTTGHEFNR 1098
>SPAC57A10.07 |||conserved protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 311
Score = 25.8 bits (54), Expect = 3.5
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = -3
Query: 297 LFPRRL*RDVMKAC*LFLISCSDLLNNMATCPSLSSRLLSLKYP 166
L +R+ R+ + +LI+C +L+ + CPS S+ + K P
Sbjct: 267 LVKKRMERNPFRRQHSYLITCPELIPLLQYCPSDPSKFFNGKLP 310
>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1428
Score = 25.8 bits (54), Expect = 3.5
Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 8/64 (12%)
Frame = +2
Query: 188 REDKDGHV-AMLFNKSEQDIKNNQQAFITSLHSLL-------GNKPNLAVNIESIKAVSE 343
R D D ++ LFN+ E+DI++ + + + ++LL G +P+ + E K S
Sbjct: 412 RADDDAYLMGDLFNQEEEDIQDTENDLLNANYTLLPLTTDKSGTRPSTTLQYELHKIGSN 471
Query: 344 SKSQ 355
K++
Sbjct: 472 IKAE 475
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 25.4 bits (53), Expect = 4.6
Identities = 21/80 (26%), Positives = 34/80 (42%)
Frame = -3
Query: 240 SCSDLLNNMATCPSLSSRLLSLKYPTALKRHSGFCSFSFKRRGISIVISLTSSPLGL*QV 61
SCSD + TC ++ +LLS + K H G C + ++I T++ + +
Sbjct: 467 SCSDPI---PTCENICGKLLSCGHRCKYKCHLGSCGTCSET--LTIPCRCTANEVQVTCE 521
Query: 60 PFRQHLIPFITEYATIKSSC 1
+ IP TI SC
Sbjct: 522 QLQNGFIPTCERLCTILLSC 541
>SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1419
Score = 25.4 bits (53), Expect = 4.6
Identities = 10/38 (26%), Positives = 21/38 (55%)
Frame = +2
Query: 275 LHSLLGNKPNLAVNIESIKAVSESKSQVVIYVVDKGAN 388
+++ L PN+ NI ++ + + +V Y+V +G N
Sbjct: 757 INTHLSRHPNVRENITLVRRDKDEEPTLVAYIVPQGLN 794
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 25.0 bits (52), Expect = 6.1
Identities = 12/48 (25%), Positives = 25/48 (52%)
Frame = +2
Query: 218 LFNKSEQDIKNNQQAFITSLHSLLGNKPNLAVNIESIKAVSESKSQVV 361
L+N +++ NN+Q + S +SL + + ++ V E+K+ V
Sbjct: 315 LYNNVTEELNNNKQQLLISENSLRELQEKYDSVVSELQVVKENKNTSV 362
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 25.0 bits (52), Expect = 6.1
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -2
Query: 244 DILFRFVKQHGDVSVLVLSSAELEVSNCFETTQRI 140
DILF F++ H +V S+ +V +ET +R+
Sbjct: 272 DILFGFIRTHLKFKTIVFLSSCKQVRFVYETFRRM 306
>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 728
Score = 24.6 bits (51), Expect = 8.0
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +2
Query: 290 GNKPNLAVNIESIKAVSESKSQVVIYVVDK 379
G+ + VN+E+ SE+ V +YV+DK
Sbjct: 383 GSAGEMYVNVETRSIQSENIGNVSLYVLDK 412
>SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 595
Score = 24.6 bits (51), Expect = 8.0
Identities = 9/19 (47%), Positives = 15/19 (78%)
Frame = -1
Query: 464 RCQSVLFSLHRRLEKQLIP 408
R QS++F L+++ EK+ IP
Sbjct: 103 RIQSIIFELNQQCEKESIP 121
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,099,849
Number of Sequences: 5004
Number of extensions: 42454
Number of successful extensions: 129
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 188065158
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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