Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_G06
(485 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_06_0136 + 25928152-25928659,25928767-25928899,25928987-259290... 31 0.49
01_01_0154 - 1355601-1356102,1356197-1356389,1356465-1356520,135... 31 0.49
05_06_0133 + 25905455-25905545,25905650-25906202,25906310-259068... 28 3.5
08_01_0114 - 900530-901191,901269-901338,901536-901640,901721-90... 28 4.6
04_03_0996 + 21533874-21534469,21534963-21535041 28 4.6
10_02_0041 + 4486623-4486855,4487002-4487036,4487132-4487253,448... 27 6.0
05_07_0287 + 28993615-28995617,28996464-28996524,28996603-28996830 27 8.0
05_01_0127 - 863755-865182 27 8.0
05_01_0124 + 852358-853257 27 8.0
>05_06_0136 +
25928152-25928659,25928767-25928899,25928987-25929058,
25929150-25929221,25929507-25929670,25929760-25930025,
25930115-25930241,25930599-25930667,25930765-25930957,
25931053-25931299,25931342-25931470,25932367-25932654
Length = 755
Score = 31.1 bits (67), Expect = 0.49
Identities = 16/36 (44%), Positives = 23/36 (63%)
Frame = +2
Query: 266 ITSLHSLLGNKPNLAVNIESIKAVSESKSQVVIYVV 373
+ SL L GN PNL N S +A ++ KS++ IY+V
Sbjct: 256 LPSLTVLYGNNPNLCTNDNSCQA-AKHKSKLAIYIV 290
>01_01_0154 -
1355601-1356102,1356197-1356389,1356465-1356520,
1356997-1357066,1357188-1357314,1357418-1357695,
1357908-1358065,1358166-1358246,1358339-1358410,
1358531-1358602,1358729-1358867,1358987-1360045,
1360170-1360257
Length = 964
Score = 31.1 bits (67), Expect = 0.49
Identities = 16/34 (47%), Positives = 22/34 (64%)
Frame = +2
Query: 272 SLHSLLGNKPNLAVNIESIKAVSESKSQVVIYVV 373
SL+ GN PNL +N S KA ++ KS++ IY V
Sbjct: 500 SLNVRYGNNPNLCINGNSCKA-AKKKSKLAIYTV 532
>05_06_0133 +
25905455-25905545,25905650-25906202,25906310-25906806,
25906905-25907043,25907182-25907253,25907344-25907415,
25907503-25907583,25907899-25908065,25908148-25908416,
25908512-25908638,25908752-25908820,25908928-25909120,
25909215-25909707
Length = 940
Score = 28.3 bits (60), Expect = 3.5
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = +2
Query: 272 SLHSLLGNKPNLAVNIESIKAVSESKSQVVIYVV 373
SL+ GN PNL N +S + ++ KS++ IY+V
Sbjct: 498 SLNLRYGNNPNLCTNGDSCQP-AKKKSKLAIYIV 530
>08_01_0114 -
900530-901191,901269-901338,901536-901640,901721-901831,
901912-902016,902245-902391,903273-903354,903445-903786,
903873-904177,904259-904435,904799-904852,905171-905254,
905855-905968,906048-906321,907552-907926,908003-908267,
908352-908538,908615-909052,909895-909966,910037-910630,
911471-911623,911700-911828,912326-912657,912705-912840,
913046-913491,913580-915087,915169-915431,915622-915738,
915844-916014,916743-916845,916930-916988,918360-918461,
918560-918649,918727-918877,919745-919830,919926-920102,
920915-920978,921859-922008,923132-923211,923311-923376,
924540-924747,925502-925575,925761-925848,926140-926312,
926541-926609,926698-926741,927074-927167,927290-927366,
927475-927552,927992-928085
Length = 3314
Score = 27.9 bits (59), Expect = 4.6
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = -2
Query: 331 FNRFYVDS*IWFISKETMKGCYEGLLIIFDILFRFVKQHGDVSVLVL 191
FN + +D W S +K YE L +I L++F Q GD +VL
Sbjct: 188 FNLYLLDLSWWNASYIILKP-YESLEVIISSLYQFCLQQGDYLGIVL 233
>04_03_0996 + 21533874-21534469,21534963-21535041
Length = 224
Score = 27.9 bits (59), Expect = 4.6
Identities = 12/20 (60%), Positives = 12/20 (60%)
Frame = -2
Query: 85 FPIGPVTGSISPAPDPFHHR 26
FP P SPAP PFHHR
Sbjct: 62 FPFAP----FSPAPSPFHHR 77
>10_02_0041 +
4486623-4486855,4487002-4487036,4487132-4487253,
4487496-4487585,4487711-4487830,4487941-4488024,
4488123-4488200,4488349-4488474,4488564-4488653,
4489183-4489218,4489294-4489349,4489569-4489716,
4489797-4490130,4491249-4491384,4491595-4491636,
4491725-4491893,4492471-4492554,4492660-4492755
Length = 692
Score = 27.5 bits (58), Expect = 6.0
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = +3
Query: 84 NWSSLLQSKCPXXXXXXXKIRCVVSKQLDTSS 179
NWSS+L+S CP +++ +K+ +S+
Sbjct: 440 NWSSVLRSTCPVETSSQDELKECANKECTSSA 471
>05_07_0287 + 28993615-28995617,28996464-28996524,28996603-28996830
Length = 763
Score = 27.1 bits (57), Expect = 8.0
Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 3/81 (3%)
Frame = +2
Query: 197 KDGHVAMLFN-KSEQDIKNNQQAFITSLHSLLGNKPNLAV-NIESIKAVSESKSQVVIYV 370
+DG V+ + K +QD N Q FIT +S + N +V +E+I + + Y
Sbjct: 506 EDGDVSKKYEEKIKQDDNNFQSEFITERYSKCSKEDNNSVIQVETIATICKQDDLDDCYS 565
Query: 371 VDKGANGTH-ISASELAAFLN 430
N H I S+L + +N
Sbjct: 566 ELLSPNSEHAIMPSKLESSVN 586
>05_01_0127 - 863755-865182
Length = 475
Score = 27.1 bits (57), Expect = 8.0
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = -1
Query: 485 PESQWSIRCQSVLFSLHRRLEKQLIPKRI 399
P WS+RC L L R + +L+ +R+
Sbjct: 330 PSPSWSVRCSIYLNRLPREVSDELMEERV 358
>05_01_0124 + 852358-853257
Length = 299
Score = 27.1 bits (57), Expect = 8.0
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = -1
Query: 485 PESQWSIRCQSVLFSLHRRLEKQLIPKRI 399
P WS+RC L L R + +L+ +R+
Sbjct: 150 PSPSWSVRCSIYLNRLPREVSDELMEERV 178
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,938,866
Number of Sequences: 37544
Number of extensions: 284905
Number of successful extensions: 711
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 697
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 711
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 999806640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -