Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_G06
         (485 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_725| Best HMM Match : Apolipoprotein (HMM E-Value=0.51)             89   2e-18
SB_3851| Best HMM Match : TSP_1 (HMM E-Value=3.7e-24)                  31   0.50 
SB_49776| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.0  
SB_7343| Best HMM Match : EGF (HMM E-Value=0)                          28   4.7  
SB_24227| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.2  
SB_51379| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.2  

>SB_725| Best HMM Match : Apolipoprotein (HMM E-Value=0.51)
          Length = 567

 Score = 89.0 bits (211), Expect = 2e-18
 Identities = 38/86 (44%), Positives = 57/86 (66%)
 Frame = +2

Query: 137 QNPLCRFKAVGYFKLSRREDKDGHVAMLFNKSEQDIKNNQQAFITSLHSLLGNKPNLAVN 316
           +NP CRFK VGY +L    + DG VA++  K E D++  QQ F+T+LH   G+KP + V 
Sbjct: 232 ENPYCRFKVVGYSQLPSSGNDDGLVAIVVKKKESDVRQQQQEFVTALHKCFGSKPTVMVC 291

Query: 317 IESIKAVSESKSQVVIYVVDKGANGT 394
           ++ +K + E  ++VVIYVV++  NGT
Sbjct: 292 VDGLKPLPEDCTEVVIYVVERAENGT 317



 Score = 44.8 bits (101), Expect = 4e-05
 Identities = 17/33 (51%), Positives = 24/33 (72%)
 Frame = +1

Query: 28  GDERDQVLAKWNLLQAQWGTGQAYYNRNAPPLE 126
           GDERD ++AK N LQA WGTG+ Y+N+    ++
Sbjct: 196 GDERDGIIAKLNQLQAYWGTGKGYFNQQGEAVD 228


>SB_3851| Best HMM Match : TSP_1 (HMM E-Value=3.7e-24)
          Length = 429

 Score = 31.1 bits (67), Expect = 0.50
 Identities = 16/54 (29%), Positives = 25/54 (46%)
 Frame = +3

Query: 72  GPMGNWSSLLQSKCPXXXXXXXKIRCVVSKQLDTSSSADERTRTDTSPCCLTNR 233
           GP   W +   S+C        ++R V     DT S+ D RT+  +S  C T++
Sbjct: 151 GPCATWQTGTWSQCSVTCGKGTQVRTVTCSDKDT-SACDLRTKPQSSTVCGTSQ 203


>SB_49776| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 290

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 22/97 (22%), Positives = 41/97 (42%)
 Frame = +2

Query: 71  RPNGELVKLITIEMPLLLKLNEQNPLCRFKAVGYFKLSRREDKDGHVAMLFNKSEQDIKN 250
           R NG  +K +T     + K N     C  KA   F   +  DK+ +   + N    ++ N
Sbjct: 180 RGNGRCIKGVTSVGMDVNKNNMIRRSCPGKAKT-FTPKKNIDKEKNAVQILNDIAANVDN 238

Query: 251 NQQAFITSLHSLLGNKPNLAVNIESIKAVSESKSQVV 361
                ++++  L+G K     N +    V++  S+V+
Sbjct: 239 RDDKMLSAISKLIGKKDLFFKNSKKDDGVAKDVSEVL 275


>SB_7343| Best HMM Match : EGF (HMM E-Value=0)
          Length = 1233

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
 Frame = +1

Query: 385 EWNPYIRFGISCFSKR---RCSENSTDWHRMLHCDS 483
           +++  + F   C  K    RCS ++TDW+ +  CD+
Sbjct: 651 DYHALVNFTCQCPYKTFGPRCSRDATDWYNLGECDA 686


>SB_24227| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 253

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +2

Query: 218 LFNKSEQDIKNNQQAFITSLHSLLGNKPNL 307
           LFN  +++IK N Q FITS    L +K  L
Sbjct: 140 LFNFIKENIKENTQIFITSHSPTLTSKAKL 169


>SB_51379| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 163

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = +2

Query: 152 RFKAVGYFKLSRREDKDGHVAMLFNKSEQDIKNNQQAFITSLHSLLG 292
           RFK+VGY       DK G       +   D  NN + F +SL ++ G
Sbjct: 13  RFKSVGYLAQQEMRDKWGEKKAKEIQGFAD-SNNSKQFFSSLKTIYG 58


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,823,198
Number of Sequences: 59808
Number of extensions: 317641
Number of successful extensions: 826
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 796
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 826
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1026164244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)