Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_G06
(485 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF157322-1|AAF67488.1| 505|Homo sapiens nucleoporin p54 protein... 99 4e-21
AK223352-1|BAD97072.1| 507|Homo sapiens nucleoporin 54kDa varia... 97 4e-20
AK222752-1|BAD96472.1| 508|Homo sapiens nucleoporin 54kDa varia... 97 4e-20
AK001517-1|BAA91735.1| 484|Homo sapiens protein ( Homo sapiens ... 95 2e-19
BX538002-1|CAD97957.1| 291|Homo sapiens hypothetical protein pr... 73 7e-13
BC114463-1|AAI14464.2| 526|Homo sapiens hemopoietic cell kinase... 30 5.0
BC108931-1|AAI08932.2| 526|Homo sapiens hemopoietic cell kinase... 30 5.0
BC108930-1|AAI08931.2| 526|Homo sapiens hemopoietic cell kinase... 30 5.0
BC094847-1|AAH94847.2| 526|Homo sapiens hemopoietic cell kinase... 30 5.0
BC014435-1|AAH14435.2| 526|Homo sapiens hemopoietic cell kinase... 30 5.0
BC037563-1|AAH37563.1| 770|Homo sapiens component of oligomeric... 29 6.6
BC000549-1|AAH00549.1| 770|Homo sapiens component of oligomeric... 29 6.6
>AF157322-1|AAF67488.1| 505|Homo sapiens nucleoporin p54 protein
protein.
Length = 505
Score = 99 bits (238), Expect = 4e-21
Identities = 45/105 (42%), Positives = 69/105 (65%), Gaps = 2/105 (1%)
Frame = +2
Query: 122 LKLNEQNPLCRFKAVGYFKLSRREDKDGHVAMLFNKSEQDIKNNQQAFITSLHSLLGNKP 301
++ ++NP CRFKAVGY + +D+DG V ++FNK E +I++ QQ + SLH +LG
Sbjct: 161 VEFTQENPFCRFKAVGYSCMPSNKDEDGLVVLVFNKKETEIRSQQQQLVESLHKVLGGNQ 220
Query: 302 NLAVNIESIKAVSESKSQVVIYVVDKGANGT--HISASELAAFLN 430
L VN+E K + + +++VVIYVV++ NGT + A+ L A LN
Sbjct: 221 TLTVNVEGTKTLPDDQTEVVIYVVERSPNGTSRRVPATTLYAHLN 265
Score = 60.1 bits (139), Expect = 4e-09
Identities = 23/35 (65%), Positives = 28/35 (80%)
Frame = +1
Query: 22 VFGDERDQVLAKWNLLQAQWGTGQAYYNRNAPPLE 126
+ GDERD +LAKWN LQA WGTG+ Y+N N PP+E
Sbjct: 128 LLGDERDAILAKWNQLQAFWGTGKGYFNNNIPPVE 162
>AK223352-1|BAD97072.1| 507|Homo sapiens nucleoporin 54kDa variant
protein.
Length = 507
Score = 96.7 bits (230), Expect = 4e-20
Identities = 40/91 (43%), Positives = 62/91 (68%)
Frame = +2
Query: 122 LKLNEQNPLCRFKAVGYFKLSRREDKDGHVAMLFNKSEQDIKNNQQAFITSLHSLLGNKP 301
++ ++NP CRFKAVGY + +D+DG V ++FNK E +I++ QQ + SLH +LG
Sbjct: 162 VEFTQENPFCRFKAVGYSCMPSNKDEDGLVVLVFNKKETEIRSQQQQLVESLHKVLGGNQ 221
Query: 302 NLAVNIESIKAVSESKSQVVIYVVDKGANGT 394
L VN+E K + + +++VVIYVV++ NGT
Sbjct: 222 TLTVNVEGTKTLPDDQTEVVIYVVERSPNGT 252
Score = 60.1 bits (139), Expect = 4e-09
Identities = 23/35 (65%), Positives = 28/35 (80%)
Frame = +1
Query: 22 VFGDERDQVLAKWNLLQAQWGTGQAYYNRNAPPLE 126
+ GDERD +LAKWN LQA WGTG+ Y+N N PP+E
Sbjct: 129 LLGDERDAILAKWNQLQAFWGTGKGYFNNNIPPVE 163
>AK222752-1|BAD96472.1| 508|Homo sapiens nucleoporin 54kDa variant
protein.
Length = 508
Score = 96.7 bits (230), Expect = 4e-20
Identities = 40/91 (43%), Positives = 62/91 (68%)
Frame = +2
Query: 122 LKLNEQNPLCRFKAVGYFKLSRREDKDGHVAMLFNKSEQDIKNNQQAFITSLHSLLGNKP 301
++ ++NP CRFKAVGY + +D+DG V ++FNK E +I++ QQ + SLH +LG
Sbjct: 163 VEFTQENPFCRFKAVGYSCMPSNKDEDGLVVLVFNKKETEIRSQQQQLVESLHKVLGGNQ 222
Query: 302 NLAVNIESIKAVSESKSQVVIYVVDKGANGT 394
L VN+E K + + +++VVIYVV++ NGT
Sbjct: 223 TLTVNVEGTKTLPDDQTEVVIYVVERSPNGT 253
Score = 60.1 bits (139), Expect = 4e-09
Identities = 23/35 (65%), Positives = 28/35 (80%)
Frame = +1
Query: 22 VFGDERDQVLAKWNLLQAQWGTGQAYYNRNAPPLE 126
+ GDERD +LAKWN LQA WGTG+ Y+N N PP+E
Sbjct: 130 LLGDERDAILAKWNQLQAFWGTGKGYFNNNIPPVE 164
>AK001517-1|BAA91735.1| 484|Homo sapiens protein ( Homo sapiens
cDNA FLJ10655 fis, clone NT2RP2005933, weakly similar to
NUCLEOPORIN NUP57. ).
Length = 484
Score = 94.7 bits (225), Expect = 2e-19
Identities = 39/91 (42%), Positives = 62/91 (68%)
Frame = +2
Query: 122 LKLNEQNPLCRFKAVGYFKLSRREDKDGHVAMLFNKSEQDIKNNQQAFITSLHSLLGNKP 301
++ ++NP CRFKAVGY + +D+DG V ++FNK E +I++ QQ + SLH +LG
Sbjct: 162 VEFTQENPFCRFKAVGYSCMPSNKDEDGLVVLVFNKKETEIRSQQQQLVESLHKVLGGNQ 221
Query: 302 NLAVNIESIKAVSESKSQVVIYVVDKGANGT 394
L V++E K + + +++VVIYVV++ NGT
Sbjct: 222 TLTVSVEGTKTLPDDQTEVVIYVVERSPNGT 252
Score = 60.1 bits (139), Expect = 4e-09
Identities = 23/35 (65%), Positives = 28/35 (80%)
Frame = +1
Query: 22 VFGDERDQVLAKWNLLQAQWGTGQAYYNRNAPPLE 126
+ GDERD +LAKWN LQA WGTG+ Y+N N PP+E
Sbjct: 129 LLGDERDAILAKWNQLQAFWGTGKGYFNNNIPPVE 163
>BX538002-1|CAD97957.1| 291|Homo sapiens hypothetical protein
protein.
Length = 291
Score = 72.5 bits (170), Expect = 7e-13
Identities = 30/68 (44%), Positives = 47/68 (69%)
Frame = +2
Query: 191 EDKDGHVAMLFNKSEQDIKNNQQAFITSLHSLLGNKPNLAVNIESIKAVSESKSQVVIYV 370
+D+DG V ++FNK E +I++ QQ + SLH +LG L VN+E K + + +++VVIYV
Sbjct: 5 KDEDGLVVLVFNKKETEIRSQQQQLVESLHKVLGGNQTLTVNVEGTKTLPDDQTEVVIYV 64
Query: 371 VDKGANGT 394
V++ NGT
Sbjct: 65 VERSPNGT 72
>BC114463-1|AAI14464.2| 526|Homo sapiens hemopoietic cell kinase
protein.
Length = 526
Score = 29.9 bits (64), Expect = 5.0
Identities = 15/48 (31%), Positives = 20/48 (41%)
Frame = +3
Query: 78 MGNWSSLLQSKCPXXXXXXXKIRCVVSKQLDTSSSADERTRTDTSPCC 221
MG SS CP ++ C+ SK L + +T T SP C
Sbjct: 1 MGGRSSCEDPGCPRDEERAPRMGCMKSKFLQVGGNTFSKTETSASPHC 48
>BC108931-1|AAI08932.2| 526|Homo sapiens hemopoietic cell kinase
protein.
Length = 526
Score = 29.9 bits (64), Expect = 5.0
Identities = 15/48 (31%), Positives = 20/48 (41%)
Frame = +3
Query: 78 MGNWSSLLQSKCPXXXXXXXKIRCVVSKQLDTSSSADERTRTDTSPCC 221
MG SS CP ++ C+ SK L + +T T SP C
Sbjct: 1 MGGRSSCEDPGCPRDEERAPRMGCMKSKFLQVGGNTFSKTETSASPHC 48
>BC108930-1|AAI08931.2| 526|Homo sapiens hemopoietic cell kinase
protein.
Length = 526
Score = 29.9 bits (64), Expect = 5.0
Identities = 15/48 (31%), Positives = 20/48 (41%)
Frame = +3
Query: 78 MGNWSSLLQSKCPXXXXXXXKIRCVVSKQLDTSSSADERTRTDTSPCC 221
MG SS CP ++ C+ SK L + +T T SP C
Sbjct: 1 MGGRSSCEDPGCPRDEERAPRMGCMKSKFLQVGGNTFSKTETSASPHC 48
>BC094847-1|AAH94847.2| 526|Homo sapiens hemopoietic cell kinase
protein.
Length = 526
Score = 29.9 bits (64), Expect = 5.0
Identities = 15/48 (31%), Positives = 20/48 (41%)
Frame = +3
Query: 78 MGNWSSLLQSKCPXXXXXXXKIRCVVSKQLDTSSSADERTRTDTSPCC 221
MG SS CP ++ C+ SK L + +T T SP C
Sbjct: 1 MGGRSSCEDPGCPRDEERAPRMGCMKSKFLQVGGNTFSKTETSASPHC 48
>BC014435-1|AAH14435.2| 526|Homo sapiens hemopoietic cell kinase
protein.
Length = 526
Score = 29.9 bits (64), Expect = 5.0
Identities = 15/48 (31%), Positives = 20/48 (41%)
Frame = +3
Query: 78 MGNWSSLLQSKCPXXXXXXXKIRCVVSKQLDTSSSADERTRTDTSPCC 221
MG SS CP ++ C+ SK L + +T T SP C
Sbjct: 1 MGGRSSCEDPGCPRDEERAPRMGCMKSKFLQVGGNTFSKTETSASPHC 48
>BC037563-1|AAH37563.1| 770|Homo sapiens component of oligomeric
golgi complex 7 protein.
Length = 770
Score = 29.5 bits (63), Expect = 6.6
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Frame = +2
Query: 200 DGHVAMLFNKSEQDIKNNQQAFITSLHSLLGNKPNLAVNIESIK-AVSESKSQVVIYVVD 376
DGH A L K + I+ A + H L N P + ++E++K S K Q+++ D
Sbjct: 34 DGHAATLVMKLQLFIQEVNHAVEETSHQALQNMPKVLRDVEALKQEASFLKEQMILVKED 93
>BC000549-1|AAH00549.1| 770|Homo sapiens component of oligomeric
golgi complex 7 protein.
Length = 770
Score = 29.5 bits (63), Expect = 6.6
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Frame = +2
Query: 200 DGHVAMLFNKSEQDIKNNQQAFITSLHSLLGNKPNLAVNIESIK-AVSESKSQVVIYVVD 376
DGH A L K + I+ A + H L N P + ++E++K S K Q+++ D
Sbjct: 34 DGHAATLVMKLQLFIQEVNHAVEETSHQALQNMPKVLRDVEALKQEASFLKEQMILVKED 93
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 75,409,780
Number of Sequences: 237096
Number of extensions: 1621367
Number of successful extensions: 3082
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 3001
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3079
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 4384610846
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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