Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_G06
(485 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z50016-6|CAC42350.1| 448|Caenorhabditis elegans Hypothetical pr... 28 3.1
Z50016-5|CAC42349.1| 506|Caenorhabditis elegans Hypothetical pr... 28 3.1
Z50016-4|CAC42348.1| 475|Caenorhabditis elegans Hypothetical pr... 28 3.1
Z50016-3|CAC42347.1| 487|Caenorhabditis elegans Hypothetical pr... 28 3.1
Z50016-2|CAC42346.1| 487|Caenorhabditis elegans Hypothetical pr... 28 3.1
Z50016-1|CAA90318.1| 1106|Caenorhabditis elegans Hypothetical pr... 28 3.1
AF151644-1|AAD42386.1| 448|Caenorhabditis elegans ionotropic GA... 28 3.1
AF151643-1|AAD42385.1| 506|Caenorhabditis elegans ionotropic GA... 28 3.1
AF151642-1|AAD42384.1| 475|Caenorhabditis elegans ionotropic GA... 28 3.1
AF151641-1|AAD42383.1| 487|Caenorhabditis elegans ionotropic GA... 28 3.1
AF151640-1|AAD42382.1| 487|Caenorhabditis elegans ionotropic GA... 28 3.1
Z66515-2|CAA91353.1| 543|Caenorhabditis elegans Hypothetical pr... 27 5.5
S66757-1|AAB28819.1| 581|Caenorhabditis elegans Egl-43 protein. 27 5.5
Z70284-13|CAB54280.1| 639|Caenorhabditis elegans Hypothetical p... 27 7.2
Z70284-12|CAB54278.1| 549|Caenorhabditis elegans Hypothetical p... 27 7.2
Z70284-11|CAA94281.1| 612|Caenorhabditis elegans Hypothetical p... 27 7.2
U41274-5|AAA82461.2| 571|Caenorhabditis elegans Nematode astaci... 27 7.2
AJ561208-1|CAD99210.1| 278|Caenorhabditis elegans NAS-15 protei... 27 7.2
AY819766-1|AAV69856.1| 4250|Caenorhabditis elegans kettin protein. 27 9.5
AF106579-4|AAK82895.1| 4203|Caenorhabditis elegans Kettin (droso... 27 9.5
AF106579-3|ABS19464.1| 4488|Caenorhabditis elegans Kettin (droso... 27 9.5
AF106579-2|AAM45364.1| 4369|Caenorhabditis elegans Kettin (droso... 27 9.5
AF106579-1|AAM45363.1| 4447|Caenorhabditis elegans Kettin (droso... 27 9.5
AB026846-1|BAA90302.2| 4219|Caenorhabditis elegans kettin protein. 27 9.5
>Z50016-6|CAC42350.1| 448|Caenorhabditis elegans Hypothetical
protein T21C12.1f protein.
Length = 448
Score = 28.3 bits (60), Expect = 3.1
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Frame = +2
Query: 191 EDKDGHVAMLFNKSEQDIKNNQQAFITSLHSLLGNKP---NLAVNIESIKAVSE 343
+D+D H+ S D N+ + L G KP + +++ SI AVSE
Sbjct: 23 QDEDSHINTQLLSSVLDRLTNRTTYDKRLRPRYGEKPVDVGITIHVSSISAVSE 76
>Z50016-5|CAC42349.1| 506|Caenorhabditis elegans Hypothetical
protein T21C12.1e protein.
Length = 506
Score = 28.3 bits (60), Expect = 3.1
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Frame = +2
Query: 191 EDKDGHVAMLFNKSEQDIKNNQQAFITSLHSLLGNKP---NLAVNIESIKAVSE 343
+D+D H+ S D N+ + L G KP + +++ SI AVSE
Sbjct: 23 QDEDSHINTQLLSSVLDRLTNRTTYDKRLRPRYGEKPVDVGITIHVSSISAVSE 76
>Z50016-4|CAC42348.1| 475|Caenorhabditis elegans Hypothetical
protein T21C12.1d protein.
Length = 475
Score = 28.3 bits (60), Expect = 3.1
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Frame = +2
Query: 191 EDKDGHVAMLFNKSEQDIKNNQQAFITSLHSLLGNKP---NLAVNIESIKAVSE 343
+D+D H+ S D N+ + L G KP + +++ SI AVSE
Sbjct: 23 QDEDSHINTQLLSSVLDRLTNRTTYDKRLRPRYGEKPVDVGITIHVSSISAVSE 76
>Z50016-3|CAC42347.1| 487|Caenorhabditis elegans Hypothetical
protein T21C12.1c protein.
Length = 487
Score = 28.3 bits (60), Expect = 3.1
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Frame = +2
Query: 191 EDKDGHVAMLFNKSEQDIKNNQQAFITSLHSLLGNKP---NLAVNIESIKAVSE 343
+D+D H+ S D N+ + L G KP + +++ SI AVSE
Sbjct: 23 QDEDSHINTQLLSSVLDRLTNRTTYDKRLRPRYGEKPVDVGITIHVSSISAVSE 76
>Z50016-2|CAC42346.1| 487|Caenorhabditis elegans Hypothetical
protein T21C12.1b protein.
Length = 487
Score = 28.3 bits (60), Expect = 3.1
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Frame = +2
Query: 191 EDKDGHVAMLFNKSEQDIKNNQQAFITSLHSLLGNKP---NLAVNIESIKAVSE 343
+D+D H+ S D N+ + L G KP + +++ SI AVSE
Sbjct: 23 QDEDSHINTQLLSSVLDRLTNRTTYDKRLRPRYGEKPVDVGITIHVSSISAVSE 76
>Z50016-1|CAA90318.1| 1106|Caenorhabditis elegans Hypothetical
protein T21C12.1a protein.
Length = 1106
Score = 28.3 bits (60), Expect = 3.1
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Frame = +2
Query: 191 EDKDGHVAMLFNKSEQDIKNNQQAFITSLHSLLGNKP---NLAVNIESIKAVSE 343
+D+D H+ S D N+ + L G KP + +++ SI AVSE
Sbjct: 23 QDEDSHINTQLLSSVLDRLTNRTTYDKRLRPRYGEKPVDVGITIHVSSISAVSE 76
>AF151644-1|AAD42386.1| 448|Caenorhabditis elegans ionotropic GABA
receptor subunitUNC-49C protein.
Length = 448
Score = 28.3 bits (60), Expect = 3.1
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Frame = +2
Query: 191 EDKDGHVAMLFNKSEQDIKNNQQAFITSLHSLLGNKP---NLAVNIESIKAVSE 343
+D+D H+ S D N+ + L G KP + +++ SI AVSE
Sbjct: 23 QDEDSHINTQLLSSVLDRLTNRTTYDKRLRPRYGEKPVDVGITIHVSSISAVSE 76
>AF151643-1|AAD42385.1| 506|Caenorhabditis elegans ionotropic GABA
receptor subunitUNC-49B.3 protein.
Length = 506
Score = 28.3 bits (60), Expect = 3.1
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Frame = +2
Query: 191 EDKDGHVAMLFNKSEQDIKNNQQAFITSLHSLLGNKP---NLAVNIESIKAVSE 343
+D+D H+ S D N+ + L G KP + +++ SI AVSE
Sbjct: 23 QDEDSHINTQLLSSVLDRLTNRTTYDKRLRPRYGEKPVDVGITIHVSSISAVSE 76
>AF151642-1|AAD42384.1| 475|Caenorhabditis elegans ionotropic GABA
receptor subunitUNC-49B.2 protein.
Length = 475
Score = 28.3 bits (60), Expect = 3.1
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Frame = +2
Query: 191 EDKDGHVAMLFNKSEQDIKNNQQAFITSLHSLLGNKP---NLAVNIESIKAVSE 343
+D+D H+ S D N+ + L G KP + +++ SI AVSE
Sbjct: 23 QDEDSHINTQLLSSVLDRLTNRTTYDKRLRPRYGEKPVDVGITIHVSSISAVSE 76
>AF151641-1|AAD42383.1| 487|Caenorhabditis elegans ionotropic GABA
receptor subunitUNC-49B.1 protein.
Length = 487
Score = 28.3 bits (60), Expect = 3.1
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Frame = +2
Query: 191 EDKDGHVAMLFNKSEQDIKNNQQAFITSLHSLLGNKP---NLAVNIESIKAVSE 343
+D+D H+ S D N+ + L G KP + +++ SI AVSE
Sbjct: 23 QDEDSHINTQLLSSVLDRLTNRTTYDKRLRPRYGEKPVDVGITIHVSSISAVSE 76
>AF151640-1|AAD42382.1| 487|Caenorhabditis elegans ionotropic GABA
receptor subunitUNC-49A protein.
Length = 487
Score = 28.3 bits (60), Expect = 3.1
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Frame = +2
Query: 191 EDKDGHVAMLFNKSEQDIKNNQQAFITSLHSLLGNKP---NLAVNIESIKAVSE 343
+D+D H+ S D N+ + L G KP + +++ SI AVSE
Sbjct: 23 QDEDSHINTQLLSSVLDRLTNRTTYDKRLRPRYGEKPVDVGITIHVSSISAVSE 76
>Z66515-2|CAA91353.1| 543|Caenorhabditis elegans Hypothetical
protein R53.3a protein.
Length = 543
Score = 27.5 bits (58), Expect = 5.5
Identities = 16/62 (25%), Positives = 29/62 (46%)
Frame = -3
Query: 210 TCPSLSSRLLSLKYPTALKRHSGFCSFSFKRRGISIVISLTSSPLGL*QVPFRQHLIPFI 31
TCP+ S++ S AL +H C + + + ++ S GL VP+ H++
Sbjct: 214 TCPTCQSQMPS---QAALTKHRPVCEMTALYKPLMAQLAGLSGAGGLGSVPYWPHILQMA 270
Query: 30 TE 25
T+
Sbjct: 271 TQ 272
>S66757-1|AAB28819.1| 581|Caenorhabditis elegans Egl-43 protein.
Length = 581
Score = 27.5 bits (58), Expect = 5.5
Identities = 16/62 (25%), Positives = 29/62 (46%)
Frame = -3
Query: 210 TCPSLSSRLLSLKYPTALKRHSGFCSFSFKRRGISIVISLTSSPLGL*QVPFRQHLIPFI 31
TCP+ S++ S AL +H C + + + ++ S GL VP+ H++
Sbjct: 214 TCPTCQSQMPS---QAALTKHRPVCEMTALYKPLMAQLAGLSGAGGLGSVPYWPHILQMA 270
Query: 30 TE 25
T+
Sbjct: 271 TQ 272
>Z70284-13|CAB54280.1| 639|Caenorhabditis elegans Hypothetical
protein K07F5.13c protein.
Length = 639
Score = 27.1 bits (57), Expect = 7.2
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +1
Query: 22 VFGDERDQVLAKWNLLQAQWGTGQAYY 102
+FG++ D V+AK N + A G G+A Y
Sbjct: 267 LFGNDNDGVVAKLNQVAAGLGVGKAPY 293
>Z70284-12|CAB54278.1| 549|Caenorhabditis elegans Hypothetical
protein K07F5.13b protein.
Length = 549
Score = 27.1 bits (57), Expect = 7.2
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +1
Query: 22 VFGDERDQVLAKWNLLQAQWGTGQAYY 102
+FG++ D V+AK N + A G G+A Y
Sbjct: 177 LFGNDNDGVVAKLNQVAAGLGVGKAPY 203
>Z70284-11|CAA94281.1| 612|Caenorhabditis elegans Hypothetical
protein K07F5.13a protein.
Length = 612
Score = 27.1 bits (57), Expect = 7.2
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +1
Query: 22 VFGDERDQVLAKWNLLQAQWGTGQAYY 102
+FG++ D V+AK N + A G G+A Y
Sbjct: 240 LFGNDNDGVVAKLNQVAAGLGVGKAPY 266
>U41274-5|AAA82461.2| 571|Caenorhabditis elegans Nematode astacin
protease protein15 protein.
Length = 571
Score = 27.1 bits (57), Expect = 7.2
Identities = 9/35 (25%), Positives = 20/35 (57%)
Frame = +2
Query: 161 AVGYFKLSRREDKDGHVAMLFNKSEQDIKNNQQAF 265
AVG+F R D+D H+ +++N + ++ + +
Sbjct: 210 AVGFFHEQSRTDRDDHITIMWNNIQAGMQGQFEKY 244
>AJ561208-1|CAD99210.1| 278|Caenorhabditis elegans NAS-15 protein
protein.
Length = 278
Score = 27.1 bits (57), Expect = 7.2
Identities = 9/35 (25%), Positives = 20/35 (57%)
Frame = +2
Query: 161 AVGYFKLSRREDKDGHVAMLFNKSEQDIKNNQQAF 265
AVG+F R D+D H+ +++N + ++ + +
Sbjct: 104 AVGFFHEQSRTDRDDHITIMWNNIQAGMQGQFEKY 138
>AY819766-1|AAV69856.1| 4250|Caenorhabditis elegans kettin protein.
Length = 4250
Score = 26.6 bits (56), Expect = 9.5
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Frame = +2
Query: 227 KSEQDIKNNQQAFITSLHSLLGNKPNLAVNIES-IKAVSESKSQVVIYVVDKGANGTHIS 403
+ E D+K+ F+T LHSL G + E+ S+ K+ V Y+ NG +S
Sbjct: 1873 EEEPDVKHGPPKFVTQLHSLDGVVEGQPSHFEAQFIPFSDPKTSVQWYL-----NGNPLS 1927
Query: 404 AS 409
AS
Sbjct: 1928 AS 1929
>AF106579-4|AAK82895.1| 4203|Caenorhabditis elegans Kettin (drosophila
actin-binding)homolog protein 1, isoform b protein.
Length = 4203
Score = 26.6 bits (56), Expect = 9.5
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Frame = +2
Query: 227 KSEQDIKNNQQAFITSLHSLLGNKPNLAVNIES-IKAVSESKSQVVIYVVDKGANGTHIS 403
+ E D+K+ F+T LHSL G + E+ S+ K+ V Y+ NG +S
Sbjct: 1790 EEEPDVKHGPPKFVTQLHSLDGVVEGQPSHFEAQFIPFSDPKTSVQWYL-----NGNPLS 1844
Query: 404 AS 409
AS
Sbjct: 1845 AS 1846
>AF106579-3|ABS19464.1| 4488|Caenorhabditis elegans Kettin (drosophila
actin-binding)homolog protein 1, isoform a protein.
Length = 4488
Score = 26.6 bits (56), Expect = 9.5
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Frame = +2
Query: 227 KSEQDIKNNQQAFITSLHSLLGNKPNLAVNIES-IKAVSESKSQVVIYVVDKGANGTHIS 403
+ E D+K+ F+T LHSL G + E+ S+ K+ V Y+ NG +S
Sbjct: 2111 EEEPDVKHGPPKFVTQLHSLDGVVEGQPSHFEAQFIPFSDPKTSVQWYL-----NGNPLS 2165
Query: 404 AS 409
AS
Sbjct: 2166 AS 2167
>AF106579-2|AAM45364.1| 4369|Caenorhabditis elegans Kettin (drosophila
actin-binding)homolog protein 1, isoform d protein.
Length = 4369
Score = 26.6 bits (56), Expect = 9.5
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Frame = +2
Query: 227 KSEQDIKNNQQAFITSLHSLLGNKPNLAVNIES-IKAVSESKSQVVIYVVDKGANGTHIS 403
+ E D+K+ F+T LHSL G + E+ S+ K+ V Y+ NG +S
Sbjct: 2111 EEEPDVKHGPPKFVTQLHSLDGVVEGQPSHFEAQFIPFSDPKTSVQWYL-----NGNPLS 2165
Query: 404 AS 409
AS
Sbjct: 2166 AS 2167
>AF106579-1|AAM45363.1| 4447|Caenorhabditis elegans Kettin (drosophila
actin-binding)homolog protein 1, isoform c protein.
Length = 4447
Score = 26.6 bits (56), Expect = 9.5
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Frame = +2
Query: 227 KSEQDIKNNQQAFITSLHSLLGNKPNLAVNIES-IKAVSESKSQVVIYVVDKGANGTHIS 403
+ E D+K+ F+T LHSL G + E+ S+ K+ V Y+ NG +S
Sbjct: 2111 EEEPDVKHGPPKFVTQLHSLDGVVEGQPSHFEAQFIPFSDPKTSVQWYL-----NGNPLS 2165
Query: 404 AS 409
AS
Sbjct: 2166 AS 2167
>AB026846-1|BAA90302.2| 4219|Caenorhabditis elegans kettin protein.
Length = 4219
Score = 26.6 bits (56), Expect = 9.5
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Frame = +2
Query: 227 KSEQDIKNNQQAFITSLHSLLGNKPNLAVNIES-IKAVSESKSQVVIYVVDKGANGTHIS 403
+ E D+K+ F+T LHSL G + E+ S+ K+ V Y+ NG +S
Sbjct: 1806 EEEPDVKHGPPKFVTQLHSLDGVVEGQPSHFEAQFIPFSDPKTSVQWYL-----NGNPLS 1860
Query: 404 AS 409
AS
Sbjct: 1861 AS 1862
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,672,513
Number of Sequences: 27780
Number of extensions: 239232
Number of successful extensions: 678
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 668
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 678
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 903458030
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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