Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_G06
         (485 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g15340.1 68416.m01936 expressed protein                             28   2.9  
At3g60920.1 68416.m06815 beige/BEACH domain-containing protein c...    28   3.8  
At2g31190.1 68415.m03809 expressed protein contains Pfam domain,...    27   5.1  
At4g14330.1 68417.m02207 phragmoplast-associated kinesin-related...    27   6.7  
At4g10940.1 68417.m01779 PHD finger family protein contains Pfam...    27   6.7  
At1g08400.1 68414.m00929 chromosome structural maintenance prote...    27   6.7  
At4g28800.1 68417.m04118 bHLH family protein contains Pfam profi...    27   8.9  
At1g50030.1 68414.m05614 target of rapamycin protein (TOR) ident...    27   8.9  

>At3g15340.1 68416.m01936 expressed protein
          Length = 487

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 15/58 (25%), Positives = 26/58 (44%)
 Frame = +2

Query: 176 KLSRREDKDGHVAMLFNKSEQDIKNNQQAFITSLHSLLGNKPNLAVNIESIKAVSESK 349
           ++  + D+ GH    +NK    + N Q++    + SL G   +L    E  + V E K
Sbjct: 81  EIKAKIDEAGHEINRYNKDRIVVSNAQESEKAEILSLFGQMKSLVSKSEGYRVVIEEK 138


>At3g60920.1 68416.m06815 beige/BEACH domain-containing protein
            contains Pfam PF02138: Beige/BEACH domain; similar to LBA
            isoform gamma (GI:10257405) [Mus musculus]; similar to
            beige-like protein (CDC4L) - Homo sapiens; similar to
            Neurobeachin: kinase A-anchoring, beige/Chediak-higashi
            protein homolog implicated in neuronal membrane traffic
            (AKAP550) (GI:11863541) [Drosophila melanogaster].
          Length = 1928

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = -3

Query: 123  KRRGISIVISLTSSPLGL*QVP-FRQHLIPFITEYATIKSSC 1
            K+   +  + ++ SPL L   P +R H +P + E + + SSC
Sbjct: 947  KQNCAASAVDVSPSPLSLVYPPNYRSHTLPTVGESSEVSSSC 988


>At2g31190.1 68415.m03809 expressed protein contains Pfam domain,
           PF04884: Protein of unknown function, DUF647
          Length = 433

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = +2

Query: 83  ELVKLITIEMPLLLKLNEQNPLCRFKAVGYFKLSRREDKDGHVAM 217
           E VKLI  E P++LK  E  P+  F+         +   DGH++M
Sbjct: 6   EKVKLIKKEDPVMLKSPEDFPVYWFETSDSVSHRYQFQSDGHLSM 50


>At4g14330.1 68417.m02207 phragmoplast-associated kinesin-related
           protein 2 (PAKRP2) identical to cDNA
           phragmoplast-associated kinesin-related protein 2
           (PAKRP2) GI:16973450
          Length = 869

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 14/52 (26%), Positives = 29/52 (55%)
 Frame = +2

Query: 224 NKSEQDIKNNQQAFITSLHSLLGNKPNLAVNIESIKAVSESKSQVVIYVVDK 379
           N++++ +K  ++  + +L SLL  +   A N E IK     ++Q++   +DK
Sbjct: 416 NEAQKQLKKKEEE-VAALRSLLTQREACATNEEEIKEKVNERTQLLKSELDK 466


>At4g10940.1 68417.m01779 PHD finger family protein contains Pfam
           profile: PF00097 zinc finger, C3HC4 type
          Length = 192

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 14/53 (26%), Positives = 21/53 (39%)
 Frame = +3

Query: 84  NWSSLLQSKCPXXXXXXXKIRCVVSKQLDTSSSADERTRTDTSPCCLTNRNKI 242
           NWS+++ + CP        I CV       SS  DE   +    CC+     +
Sbjct: 58  NWSTIM-NLCPLCQREFQLITCVPVFDSGESSKVDEDLVSGDEDCCIEEETDV 109


>At1g08400.1 68414.m00929 chromosome structural maintenance
           protein-related contains weak similarity to
           RAD50-interacting protein 1 [Homo sapiens]
           gi|11967435|gb|AAG42101
          Length = 804

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +2

Query: 221 FNKSEQDIKNNQQAFITSLHSLLGNKPN 304
           + KS++DIKN +   I S  + LGN+ N
Sbjct: 456 YRKSKEDIKNEKAWVIDSERTRLGNESN 483


>At4g28800.1 68417.m04118 bHLH family protein contains Pfam profile:
           PF00010 helix-loop-helix DNA-binding domain
          Length = 478

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = -3

Query: 237 CSDLLNNMATCPSLSSRLLSLKYPTALKRHSGFCSFSFKRRGI 109
           CS+LLN+       SS  L+ +   A +R   F +FS+ R  I
Sbjct: 96  CSELLNSTPATHPQSSISLAPRQTIATRRAENFMNFSWLRGNI 138


>At1g50030.1 68414.m05614 target of rapamycin protein (TOR)
           identical to pTOR [Arabidopsis thaliana] GI:12002902;
           contains Pfam profiles PF00454 Phosphatidylinositol 3-
           and 4-kinase, PF02259 FAT domain, PF02260 FATC domain
          Length = 2481

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = -1

Query: 449 LFSLHRRLEKQL-IPKRIYGFHSLPYRPRILPPGFYS 342
           L S H+R+ + L I  +  G   +PY P++LP  F++
Sbjct: 884 LLSYHKRVVRSLMIIFKSMGLGCVPYLPKVLPELFHT 920


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,131,764
Number of Sequences: 28952
Number of extensions: 228650
Number of successful extensions: 736
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 687
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 736
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 838967680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)