Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_G05
         (519 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57861| Best HMM Match : Ribosomal_S30 (HMM E-Value=2e-32)           79   2e-15
SB_22742| Best HMM Match : ubiquitin (HMM E-Value=0.01)                30   1.3  
SB_51094| Best HMM Match : VWA (HMM E-Value=0)                         29   3.0  
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.3  

>SB_57861| Best HMM Match : Ribosomal_S30 (HMM E-Value=2e-32)
          Length = 61

 Score = 79.0 bits (186), Expect = 2e-15
 Identities = 38/59 (64%), Positives = 40/59 (67%)
 Frame = +3

Query: 270 KVHGSLARAGKVKGQTPXXXXXXXXXXXXXXXXXXIQYNRRFVNVVQTFGRRRGPNSNS 446
           KVHGSLARAGKVK QTP                  +QYNRRFVNVVQTFGRRRGPNSN+
Sbjct: 2   KVHGSLARAGKVKSQTPKVDAQEKKKKKTGRAKRRMQYNRRFVNVVQTFGRRRGPNSNA 60


>SB_22742| Best HMM Match : ubiquitin (HMM E-Value=0.01)
          Length = 792

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 18/59 (30%), Positives = 28/59 (47%)
 Frame = +3

Query: 48  RYKMQLHIRGQSTHVLDVNGQESIGDIKNRLRLLADVESEEVTLSMCGAPLEDSCLVSE 224
           R  M L  RG ST  +++  + S+ D+K    L   +  E + L +    LEDS  + E
Sbjct: 182 RKTMLLQTRGGSTLEIEITERTSVEDLKAEAELRVGIPVELIRLQVNKVNLEDSEKICE 240


>SB_51094| Best HMM Match : VWA (HMM E-Value=0)
          Length = 3544

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 5/65 (7%)
 Frame = -2

Query: 182  RQSHLLTLNISKKPEAILD---ITDGFLTIHVKDVRRLTSNVKLHF--VSSYQESLVPNS 18
            R+ ++  L++   PEA LD    T+  LT    DV  +   + LH   +S       PN 
Sbjct: 1464 REDNITLLSMPLSPEAALDAPKFTEPLLTKPPSDVP-MAVEIILHDGGISLLANPCEPNP 1522

Query: 17   CSHGG 3
            C HGG
Sbjct: 1523 CQHGG 1527


>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2670

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -3

Query: 286  RDPCTLPPRRGTVRSSSVDESSDTRHESSRGAPHI 182
            R  CT PP   T  SSS   S+ T + S   +P++
Sbjct: 971  RSSCTTPPSSDTTNSSSAGPSA-TNNASPSSSPYV 1004


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,738,476
Number of Sequences: 59808
Number of extensions: 296101
Number of successful extensions: 697
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 642
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 697
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1160542895
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)