Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_G05
         (519 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g56670.1 68418.m07074 40S ribosomal protein S30 (RPS30C)            66   2e-11
At4g29390.1 68417.m04198 40S ribosomal protein S30 (RPS30B) RIBO...    66   2e-11
At2g19750.1 68415.m02307 40S ribosomal protein S30 (RPS30A)            66   2e-11
At2g32660.1 68415.m03992 disease resistance family protein / LRR...    33   0.12 
At3g06530.1 68416.m00757 BAP28-related similar to Protein BAP28 ...    33   0.15 
At2g32350.1 68415.m03954 ubiquitin family protein contains INTER...    28   3.3  
At2g25440.1 68415.m03047 leucine-rich repeat family protein cont...    28   4.3  
At3g09790.1 68416.m01163 polyubiquitin (UBQ8) identical to polyu...    27   5.7  
At4g13810.1 68417.m02140 disease resistance family protein / LRR...    27   7.6  

>At5g56670.1 68418.m07074 40S ribosomal protein S30 (RPS30C) 
          Length = 62

 Score = 65.7 bits (153), Expect = 2e-11
 Identities = 31/59 (52%), Positives = 37/59 (62%)
 Frame = +3

Query: 267 GKVHGSLARAGKVKGQTPXXXXXXXXXXXXXXXXXXIQYNRRFVNVVQTFGRRRGPNSN 443
           GKVHGSLARAGKV+GQTP                  +Q+NRRFV  V  FG++RGPNS+
Sbjct: 2   GKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRLQHNRRFVTAVVGFGKKRGPNSS 60


>At4g29390.1 68417.m04198 40S ribosomal protein S30 (RPS30B)
           RIBOSOMAL PROTEIN S30 - Arabidopsis
           thaliana,PID:e1358183
          Length = 62

 Score = 65.7 bits (153), Expect = 2e-11
 Identities = 31/59 (52%), Positives = 37/59 (62%)
 Frame = +3

Query: 267 GKVHGSLARAGKVKGQTPXXXXXXXXXXXXXXXXXXIQYNRRFVNVVQTFGRRRGPNSN 443
           GKVHGSLARAGKV+GQTP                  +Q+NRRFV  V  FG++RGPNS+
Sbjct: 2   GKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRLQHNRRFVTAVVGFGKKRGPNSS 60


>At2g19750.1 68415.m02307 40S ribosomal protein S30 (RPS30A)
          Length = 62

 Score = 65.7 bits (153), Expect = 2e-11
 Identities = 31/59 (52%), Positives = 37/59 (62%)
 Frame = +3

Query: 267 GKVHGSLARAGKVKGQTPXXXXXXXXXXXXXXXXXXIQYNRRFVNVVQTFGRRRGPNSN 443
           GKVHGSLARAGKV+GQTP                  +Q+NRRFV  V  FG++RGPNS+
Sbjct: 2   GKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRLQHNRRFVTAVVGFGKKRGPNSS 60


>At2g32660.1 68415.m03992 disease resistance family protein / LRR
           family protein contains leucine rich-repeat domains
           Pfam:PF00560, INTERPRO:IPR001611; similar to Cf-4
           [Lycopersicon hirsutum] gi|2808683|emb|CAA05268
          Length = 589

 Score = 33.1 bits (72), Expect = 0.12
 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = +3

Query: 93  LDVNGQESIGDIKNRLRLLADVESE-EVTLSMCGAPLEDSCLVSELSSTE 239
           +DV+  +  G I    +++   +S  E    +CG PLE+SCL  +  ST+
Sbjct: 484 IDVSDNQLTGKIPQGTQIIGQPKSSFEGNSGLCGLPLEESCLREDAPSTQ 533


>At3g06530.1 68416.m00757 BAP28-related similar to Protein BAP28
            (Swiss-Prot:Q9H583) [Homo sapiens]
          Length = 1830

 Score = 32.7 bits (71), Expect = 0.15
 Identities = 17/56 (30%), Positives = 31/56 (55%)
 Frame = -2

Query: 197  GRTAHRQSHLLTLNISKKPEAILDITDGFLTIHVKDVRRLTSNVKLHFVSSYQESL 30
            GR A  +  LL L++    EA++D   GFL  H+ D+ ++   +   +VS + ++L
Sbjct: 1413 GRNATAEEQLLMLSVLVTLEAVIDKLGGFLNPHLGDIMKIMV-LHPEYVSDFDKNL 1467


>At2g32350.1 68415.m03954 ubiquitin family protein contains
           INTERPRO:IPR000626 ubiquitin domain
          Length = 233

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 6/60 (10%)
 Frame = +3

Query: 93  LDVNGQESIGDIKNRLRLLADVESEEVTLSM-C-----GAPLEDSCLVSELSSTELDLTV 254
           ++++ QES+ ++K RL     + +  +TL + C     G  +ED  ++S    T +DLTV
Sbjct: 1   MEISEQESVLEVKKRLGQFLQIPTSSITLFVSCWELIDGLDIEDYPIISH--GTRIDLTV 58


>At2g25440.1 68415.m03047 leucine-rich repeat family protein
           contains leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; contains similarity to NL0E
           [Lycopersicon esculentum] gi|4235643|gb|AAD13303
          Length = 671

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 13/50 (26%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = +3

Query: 93  LDVNGQESIGDIKNRLRLLADVESE-EVTLSMCGAPLEDSCLVSELSSTE 239
           + V+  +  G+I    ++   ++S  E  + +CG PLE+ C  +  S T+
Sbjct: 566 ISVSHNQLKGEIPQGTQITGQLKSSFEGNVGLCGLPLEERCFDNSASPTQ 615


>At3g09790.1 68416.m01163 polyubiquitin (UBQ8) identical to
           polyubiquitin (ubq8) GI:870793, GB:L05917 [Arabidopsis
           thaliana] (Genetics 139 (2), 921-939 (1995))
          Length = 631

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
 Frame = +3

Query: 78  QSTHVLDVNGQESIGDIKNRLRLLADVESEEVTLSMCGAPLEDSCLVSELS---STELDL 248
           + T  LDV   +SI ++K +++    +  ++  L   G  LED   +++ +    + L L
Sbjct: 12  EKTITLDVETSDSIHNVKAKIQNKEGIPLDQQRLIFAGKQLEDGLTLADYNIQKESTLHL 71

Query: 249 TVPLLGG 269
            + L GG
Sbjct: 72  VLRLRGG 78


>At4g13810.1 68417.m02140 disease resistance family protein / LRR
           family protein contains leucine rich-repeat domains
           Pfam:PF00560, INTERPRO:IPR001611; similar to disease
           resistance protein [Lycopersicon esculentum]
           gi|3894383|gb|AAC78591
          Length = 741

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 4/91 (4%)
 Frame = +3

Query: 33  AFLIRRYKMQLHIRGQSTH-VLDVNGQESIGDIKNRLRLLADVESEEVTLSMCGAPLEDS 209
           A + +  KM+L   G + +  +DV+G    GDI   + LL +V    + LSM        
Sbjct: 547 ALINKGLKMELVGSGFTIYKTIDVSGNRLEGDIPESIGLLKEV----IVLSMSNNAFTGH 602

Query: 210 C--LVSELSSTE-LDLTVPLLGGKVHGSLAR 293
               +S LS+ + LDL+   L G + G L +
Sbjct: 603 IPPSLSNLSNLQSLDLSQNRLSGSIPGELGK 633


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,011,153
Number of Sequences: 28952
Number of extensions: 207131
Number of successful extensions: 575
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 554
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 572
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 947539968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)