Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_G04
         (486 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyc...    26   3.5  
SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|c...    25   6.1  
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces...    25   8.0  

>SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 581

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = -1

Query: 393 YIFTSKNF*LLHRPCNPQEQWFSTFS*PLIFY 298
           Y  T +NF   H P N +  W S F    ++Y
Sbjct: 356 YYGTEQNFNSYHDPFNREALWLSNFDMENVYY 387


>SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 502

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +2

Query: 302 KISGQEKVENHCSCGLHGRC 361
           K+ G +KV NH S    GRC
Sbjct: 384 KMHGHQKVVNHASFSPDGRC 403


>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1154

 Score = 24.6 bits (51), Expect = 8.0
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = +2

Query: 290 LYQ*KISGQEKVENHCSCGLHGRCSN*KFLDVNMYVLKYNQD 415
           +Y     G E + N C   L G CS    L+   Y+ K+N +
Sbjct: 878 IYASSTGGYENILNICEKYLKGSCSR---LEFRKYLQKFNNE 916


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,960,985
Number of Sequences: 5004
Number of extensions: 40653
Number of successful extensions: 65
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 188065158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)