Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_G04
         (486 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79601-1|CAB01885.2|  716|Caenorhabditis elegans Hypothetical pr...    29   2.4  
U28991-4|AAK68310.1|  227|Caenorhabditis elegans Hypothetical pr...    27   5.5  
AL032631-9|CAA21575.2|  893|Caenorhabditis elegans Hypothetical ...    27   5.5  

>Z79601-1|CAB01885.2|  716|Caenorhabditis elegans Hypothetical
           protein K09A9.4 protein.
          Length = 716

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = -3

Query: 229 LTFGNWCYMYAVIYLHGKM*IYQEYKIYFI 140
           L FGN CYM AV+ L G    + +Y I  I
Sbjct: 185 LNFGNTCYMNAVLQLLGHCSPFTQYLIELI 214


>U28991-4|AAK68310.1|  227|Caenorhabditis elegans Hypothetical
           protein F08F8.7 protein.
          Length = 227

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
 Frame = -2

Query: 422 FLHLDYILKRTYLRPKTSNYYIVRVIRKSSGSQPFPD-HLFFIDRG 288
           +LHLD ++   ++   T  + +V  +RKS G++PF D HL   + G
Sbjct: 33  WLHLD-VMDGHFVPNLTFGHPVVESLRKSLGAEPFFDVHLMVSNPG 77


>AL032631-9|CAA21575.2|  893|Caenorhabditis elegans Hypothetical
           protein Y106G6H.7 protein.
          Length = 893

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +2

Query: 161 LIYLHLSMQVYNGIHITPISKC*NNSKH 244
           L+ LH+ ++V+   H+ P++K  N S H
Sbjct: 711 LLLLHIEIRVHCFFHLAPLAKYRNTSSH 738


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,458,253
Number of Sequences: 27780
Number of extensions: 214288
Number of successful extensions: 386
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 383
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 386
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 903458030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)