Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_G04
         (486 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    24   0.75 
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    23   1.3  
S78458-1|AAB34402.1|   46|Apis mellifera apamin protein.               22   3.0  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    22   4.0  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    21   5.3  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    21   7.0  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    21   9.2  

>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 24.2 bits (50), Expect = 0.75
 Identities = 9/32 (28%), Positives = 16/32 (50%)
 Frame = -3

Query: 229 LTFGNWCYMYAVIYLHGKM*IYQEYKIYFI*W 134
           L+ GNW Y  ++        ++  YK+Y+  W
Sbjct: 543 LSHGNWIYPASMTIPGSNSAVFTNYKLYWRYW 574


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
 Frame = -3

Query: 286 LFLYQEQQFI*INNMFRIILTFGNW--CYMYAVIYLHG 179
           LFL     F+ I N+  ++L  G+W  C  + V  L G
Sbjct: 268 LFLNMASVFMRIFNLICMMLLIGHWSGCLQFLVPMLQG 305


>S78458-1|AAB34402.1|   46|Apis mellifera apamin protein.
          Length = 46

 Score = 22.2 bits (45), Expect = 3.0
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +2

Query: 146 IYLIFLIYLHLSMQVYNGIHITPISKC 226
           I ++  IYL LS+ +     +TP+  C
Sbjct: 2   ISMLRCIYLFLSVILITSYFVTPVMPC 28


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.8 bits (44), Expect = 4.0
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +3

Query: 339 LADYTDDVVIRSFWT 383
           L D+T D   R FWT
Sbjct: 54  LMDFTLDFYFRQFWT 68


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 21.4 bits (43), Expect = 5.3
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -2

Query: 386 LRPKTSNYYIVRVIRKSSGS 327
           L P T  YYI+ V  + S S
Sbjct: 114 LNPNTEEYYIIEVNARLSRS 133


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = -2

Query: 230 FNIWKLVLY 204
           FNIW L+LY
Sbjct: 3   FNIWWLILY 11


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 20.6 bits (41), Expect = 9.2
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +3

Query: 345 DYTDDVVIRSFWT 383
           D+T D   R FWT
Sbjct: 56  DFTLDFYFRQFWT 68


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 133,199
Number of Sequences: 438
Number of extensions: 2698
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13297932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)