Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_G03
         (520 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.    25   0.53 
AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain tran...    25   0.53 
AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.           25   0.53 
DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        21   8.7  
AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve co...    21   8.7  

>U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.
          Length = 322

 Score = 24.6 bits (51), Expect = 0.53
 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = +1

Query: 394 WFNE-YKDYKYAPLKQSDFDKSKPKIGHYT 480
           W N  Y++YK  P   SD DK++    +YT
Sbjct: 11  WTNSFYQNYKTNPFLASDCDKNQNTEQNYT 40


>AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain
           transcription factor Fushitarazu protein.
          Length = 290

 Score = 24.6 bits (51), Expect = 0.53
 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = +1

Query: 394 WFNE-YKDYKYAPLKQSDFDKSKPKIGHYT 480
           W N  Y++YK  P   SD DK++    +YT
Sbjct: 11  WTNSFYQNYKTNPFLASDCDKNQNTEQNYT 40


>AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.
          Length = 290

 Score = 24.6 bits (51), Expect = 0.53
 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = +1

Query: 394 WFNE-YKDYKYAPLKQSDFDKSKPKIGHYT 480
           W N  Y++YK  P   SD DK++    +YT
Sbjct: 11  WTNSFYQNYKTNPFLASDCDKNQNTEHNYT 40


>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 8/34 (23%), Positives = 14/34 (41%)
 Frame = +1

Query: 337 WYSTTDSTYKLNVDNAMESWFNEYKDYKYAPLKQ 438
           W+S   +  +  + +A       Y   +Y PL Q
Sbjct: 267 WFSNRRARLRKQITSAATPLVRSYAPERYPPLAQ 300


>AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve cord
           defective protein protein.
          Length = 168

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 7/23 (30%), Positives = 13/23 (56%)
 Frame = +1

Query: 88  HSKSLLNLSCKQIKDFVNGHNYR 156
           H  S++ L+  Q+K +   H Y+
Sbjct: 72  HLASIIRLTPTQVKIWFQNHRYK 94


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 129,126
Number of Sequences: 336
Number of extensions: 2723
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12468463
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)