Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_G03
(520 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_32805| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 6e-05
SB_53466| Best HMM Match : SCP (HMM E-Value=2.4e-27) 41 5e-04
SB_8749| Best HMM Match : SCP (HMM E-Value=4.9e-16) 37 0.009
SB_21899| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.011
SB_7378| Best HMM Match : SCP (HMM E-Value=3.3e-29) 37 0.011
SB_9137| Best HMM Match : SCP (HMM E-Value=3.6e-18) 36 0.020
SB_59700| Best HMM Match : SCP (HMM E-Value=1.6e-14) 35 0.046
SB_57943| Best HMM Match : SCP (HMM E-Value=5.70048e-42) 35 0.046
SB_8748| Best HMM Match : Astacin (HMM E-Value=0) 35 0.046
SB_10643| Best HMM Match : ShTK (HMM E-Value=2.9e-23) 34 0.061
SB_7926| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.061
SB_887| Best HMM Match : SCP (HMM E-Value=7.1e-25) 34 0.081
SB_13248| Best HMM Match : SCP (HMM E-Value=2.6e-21) 33 0.11
SB_55473| Best HMM Match : SCP (HMM E-Value=1.6e-22) 33 0.19
SB_47116| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.25
SB_27401| Best HMM Match : SCP (HMM E-Value=9e-23) 32 0.33
SB_222| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.33
SB_41526| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.75
SB_3100| Best HMM Match : SCP (HMM E-Value=1.5e-20) 31 0.75
SB_41991| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.00
SB_6144| Best HMM Match : SCP (HMM E-Value=4.6e-38) 30 1.00
SB_17372| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3
SB_11891| Best HMM Match : F5_F8_type_C (HMM E-Value=4.7e-35) 30 1.3
SB_4646| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.7
SB_12270| Best HMM Match : Big_2 (HMM E-Value=8.1) 29 3.0
SB_4966| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_37501| Best HMM Match : SCP (HMM E-Value=1.2e-19) 28 4.0
SB_41| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.0
SB_57379| Best HMM Match : SCP (HMM E-Value=5.8e-19) 28 5.3
SB_15991| Best HMM Match : SCP (HMM E-Value=2.3e-23) 27 7.0
SB_21314| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.3
>SB_32805| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 224
Score = 44.4 bits (100), Expect = 6e-05
Identities = 24/64 (37%), Positives = 33/64 (51%)
Frame = +1
Query: 322 GENLYWYSTTDSTYKLNVDNAMESWFNEYKDYKYAPLKQSDFDKSKPKIGHYTQMAWSES 501
GENLY TT T D A++SW++E +Y Y + IGH+TQ+ W +
Sbjct: 126 GENLYNKGTTSGTVSTCQD-AVDSWYSEIDNYDYTDYT----NHPGGVIGHFTQIVWKST 180
Query: 502 THVG 513
T VG
Sbjct: 181 TEVG 184
>SB_53466| Best HMM Match : SCP (HMM E-Value=2.4e-27)
Length = 5087
Score = 41.1 bits (92), Expect = 5e-04
Identities = 19/53 (35%), Positives = 27/53 (50%)
Frame = +1
Query: 361 YKLNVDNAMESWFNEYKDYKYAPLKQSDFDKSKPKIGHYTQMAWSESTHVGCA 519
Y L D A E W++E KDY + L + K GH+TQ+ W + +G A
Sbjct: 3699 YDLRGDKAAEMWYDEVKDYNFETLAYN------AKCGHFTQLVWRGTKEIGVA 3745
>SB_8749| Best HMM Match : SCP (HMM E-Value=4.9e-16)
Length = 369
Score = 37.1 bits (82), Expect = 0.009
Identities = 24/65 (36%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Frame = +1
Query: 322 GENL-YWYSTTDSTYKLNVDNAMESWFNEYKDYKYAPLKQSDFDKSKPKIGHYTQMAWSE 498
GENL Y DS + +V +E+W+NE K Y + SD GH+TQ+ W
Sbjct: 284 GENLGYSCVKPDSGHDCSV--TVEAWYNEVKKYDFNSPGFSD------PTGHFTQVVWKA 335
Query: 499 STHVG 513
ST +G
Sbjct: 336 STELG 340
>SB_21899| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 307
Score = 36.7 bits (81), Expect = 0.011
Identities = 19/66 (28%), Positives = 32/66 (48%)
Frame = +1
Query: 322 GENLYWYSTTDSTYKLNVDNAMESWFNEYKDYKYAPLKQSDFDKSKPKIGHYTQMAWSES 501
GEN+ W + + T +L A+++W +E YK + + H+TQ+ W +
Sbjct: 79 GENIAWAESQEITCEL----AVQAWMDELNIYKSDGYCANPPSMPDHNVMHFTQIVWKST 134
Query: 502 THVGCA 519
T VG A
Sbjct: 135 TKVGVA 140
>SB_7378| Best HMM Match : SCP (HMM E-Value=3.3e-29)
Length = 264
Score = 36.7 bits (81), Expect = 0.011
Identities = 26/97 (26%), Positives = 36/97 (37%)
Frame = +1
Query: 223 WDEELXXXXXXXXXQNKNFHNPDKTLGSGRFQTGENLYWYSTTDSTYKLNVDNAMESWFN 402
W +EL + + + R GENL +S Y D A E W+
Sbjct: 140 WSDELAREAQYYAEKLAQQRSMQHSSKCSRNDAGENLAMFS---GRYDTAGDMACEMWYE 196
Query: 403 EYKDYKYAPLKQSDFDKSKPKIGHYTQMAWSESTHVG 513
E K Y + + F GH+TQM W S +G
Sbjct: 197 ESKKYSFV---RGGFQGGT---GHFTQMVWKGSKELG 227
>SB_9137| Best HMM Match : SCP (HMM E-Value=3.6e-18)
Length = 708
Score = 35.9 bits (79), Expect = 0.020
Identities = 20/67 (29%), Positives = 32/67 (47%)
Frame = +1
Query: 319 TGENLYWYSTTDSTYKLNVDNAMESWFNEYKDYKYAPLKQSDFDKSKPKIGHYTQMAWSE 498
+GEN+ + L A+E W+NE + Y +A + + PK H+ QM W +
Sbjct: 591 SGENIAQLRANPDSLHL-ARKAVELWYNEVRSYSFA------YPQLTPKDRHFVQMIWRK 643
Query: 499 STHVGCA 519
+ VG A
Sbjct: 644 TRAVGMA 650
>SB_59700| Best HMM Match : SCP (HMM E-Value=1.6e-14)
Length = 427
Score = 34.7 bits (76), Expect = 0.046
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Frame = +1
Query: 316 QTGENLYWYSTTDSTYKLNVDNAMESWFNEYKDYKYA-PLKQSDFDKSKPKIGHYTQMAW 492
Q GEN S + +L + A + W+N+ Y Y+ P SD D +TQ+ W
Sbjct: 300 QLGENRAKLSAVNYDCELAGEEAAKIWYNQGSHYSYSDPRLNSDTDS-------FTQLVW 352
Query: 493 SESTHVG 513
ES VG
Sbjct: 353 KESRDVG 359
>SB_57943| Best HMM Match : SCP (HMM E-Value=5.70048e-42)
Length = 632
Score = 34.7 bits (76), Expect = 0.046
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Frame = +1
Query: 316 QTGENLY-WYSTTDSTYKLNVDNAMESWFNEYKDYKYA-PLKQSDFDKSKPKIGHYTQMA 489
Q GEN+Y + D +N + A++ W+NE +Y + P QS+ GH+TQ+
Sbjct: 53 QDGENIYVQFGQAD----INGEEAVDKWYNEVNNYDFGKPGFQSN-------TGHFTQVV 101
Query: 490 WSESTHVG 513
W ++ G
Sbjct: 102 WRDTEEFG 109
>SB_8748| Best HMM Match : Astacin (HMM E-Value=0)
Length = 757
Score = 34.7 bits (76), Expect = 0.046
Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Frame = +1
Query: 322 GENLYWYSTT-DSTYKLNVDNAMESWFNEYKDYKYAPLKQSDFDKSKPKIGHYTQMAWSE 498
GENL W D Y + A W+NE KDY + F + GH+TQ+ W
Sbjct: 660 GENLAWGCFPGDKVY--SCVKATTEWYNEVKDYDF---NNPGFSGAT---GHFTQVVWKG 711
Query: 499 STHVG 513
S+ +G
Sbjct: 712 SSELG 716
>SB_10643| Best HMM Match : ShTK (HMM E-Value=2.9e-23)
Length = 2123
Score = 34.3 bits (75), Expect = 0.061
Identities = 15/45 (33%), Positives = 29/45 (64%)
Frame = +1
Query: 382 AMESWFNEYKDYKYAPLKQSDFDKSKPKIGHYTQMAWSESTHVGC 516
A+++W +E KD+ ++ KQ DK ++ H+TQ+ W ++ +GC
Sbjct: 1367 AIKAWHDEEKDFDWSSGKQ---DKDA-EVVHFTQVIWRKARRLGC 1407
>SB_7926| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 358
Score = 34.3 bits (75), Expect = 0.061
Identities = 21/66 (31%), Positives = 32/66 (48%)
Frame = +1
Query: 322 GENLYWYSTTDSTYKLNVDNAMESWFNEYKDYKYAPLKQSDFDKSKPKIGHYTQMAWSES 501
GENL + DS Y+L+ E W++E + Y++ F GH+TQ+ W S
Sbjct: 24 GENLSF----DSGYELSGGRTTEMWYDEIQKYRF---NNPGFSSG---TGHFTQVVWVGS 73
Query: 502 THVGCA 519
+G A
Sbjct: 74 QEMGVA 79
Score = 29.9 bits (64), Expect = 1.3
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +1
Query: 382 AMESWFNEYKDYKYAPLKQSDFDKSKPKIGHYTQMAWSESTHVG 513
A + W+ E Y++ + F S GH+TQ+ W+ ST +G
Sbjct: 217 ATDMWYGEVDKYRF---ENPGFSTSS---GHFTQVVWAGSTEMG 254
>SB_887| Best HMM Match : SCP (HMM E-Value=7.1e-25)
Length = 147
Score = 33.9 bits (74), Expect = 0.081
Identities = 19/66 (28%), Positives = 32/66 (48%)
Frame = +1
Query: 322 GENLYWYSTTDSTYKLNVDNAMESWFNEYKDYKYAPLKQSDFDKSKPKIGHYTQMAWSES 501
GENLY S ++ +N + ++ W++E YK+ D + GH+TQ+ W +
Sbjct: 59 GENLYMCSPSE----INAGDIVDEWYSEISKYKF------DKPGWQSGTGHFTQVVWKGT 108
Query: 502 THVGCA 519
V A
Sbjct: 109 KEVAMA 114
>SB_13248| Best HMM Match : SCP (HMM E-Value=2.6e-21)
Length = 631
Score = 33.5 bits (73), Expect = 0.11
Identities = 28/113 (24%), Positives = 49/113 (43%), Gaps = 12/113 (10%)
Frame = +1
Query: 217 MVWDEELXXXXXX----XXXQNKNFHNPD-KTLGSGRFQTGENLYWYSTT-------DST 360
+ W+ EL +NK H+P K LG G ENL +++ + T
Sbjct: 228 LTWNSELTRDAQSWADTLARENKFEHHPALKELGQG-----ENLAYFAPANRKCDGPEDT 282
Query: 361 YKLNVDNAMESWFNEYKDYKYAPLKQSDFDKSKPKIGHYTQMAWSESTHVGCA 519
++ ++ W++E +DY + D + H+TQ+ W ++T VG A
Sbjct: 283 NCVHCGEIVKDWYDEIRDYDFNKGAGKDMWSV---VLHFTQVVWRDTTEVGMA 332
>SB_55473| Best HMM Match : SCP (HMM E-Value=1.6e-22)
Length = 141
Score = 32.7 bits (71), Expect = 0.19
Identities = 19/68 (27%), Positives = 33/68 (48%)
Frame = +1
Query: 310 RFQTGENLYWYSTTDSTYKLNVDNAMESWFNEYKDYKYAPLKQSDFDKSKPKIGHYTQMA 489
R+ GEN+ S + ++ +A++ W+NE + Y+Y D GH+TQ+
Sbjct: 71 RYYKGENICRMS-----HHFDIGDALQIWYNESESYQY------DNPGFALTTGHFTQIV 119
Query: 490 WSESTHVG 513
W + VG
Sbjct: 120 WRGTREVG 127
>SB_47116| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 106
Score = 32.3 bits (70), Expect = 0.25
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +1
Query: 361 YKLNVDNAMESWFNEYKDYKYAPLKQSDFDKSKPKIGHYT 480
Y+ N + ++ WF+E + Y Y K S + +P GHYT
Sbjct: 44 YQKNPTDGVQDWFDERQHYTYG--KHSPRNCRRPSCGHYT 81
>SB_27401| Best HMM Match : SCP (HMM E-Value=9e-23)
Length = 1105
Score = 31.9 bits (69), Expect = 0.33
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = +1
Query: 370 NVDNAMESWFNEYKDYKYAPLKQSDFDKSKPKIGHYTQMAWSESTHVG 513
++++A+ W+NE Y +A +P H+TQM W S +G
Sbjct: 606 SINDAINKWYNEVCKYDFAS------GGPQPGANHFTQMVWKGSKKIG 647
>SB_222| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2323
Score = 31.9 bits (69), Expect = 0.33
Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Frame = +1
Query: 337 WYSTTDSTYKLNVDNAMESWFNEYKD-YKYAPLKQSDFDKSKPKIGHYTQMAWSESTHVG 513
W T K + A++ W++E KD Y + K + IGH+ + W T +G
Sbjct: 194 WGWTGQKVMKGAIPGAVQGWYSEIKDDYNFKTGKGAP----GKAIGHFQAVVWKGETKLG 249
Query: 514 C 516
C
Sbjct: 250 C 250
Score = 31.1 bits (67), Expect = 0.57
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Frame = +1
Query: 322 GENLYWYSTTDSTYKLNVDNAMESWFNEYKDYKYAPLKQSDFDKS--KPKIGHYTQMAWS 495
GENL W+ + S + + A+ W+NE Y DF+K GH+TQ+ W
Sbjct: 646 GENL-WFMCSSSKEQ-TPEKAVTDWYNEICKPGY------DFNKPGFSSGTGHFTQVVWK 697
Query: 496 ESTHVG 513
S +G
Sbjct: 698 GSVELG 703
>SB_41526| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 58
Score = 30.7 bits (66), Expect = 0.75
Identities = 18/54 (33%), Positives = 24/54 (44%)
Frame = +1
Query: 352 DSTYKLNVDNAMESWFNEYKDYKYAPLKQSDFDKSKPKIGHYTQMAWSESTHVG 513
D KL VD W+ E +Y + S P GH+TQ+ W ST +G
Sbjct: 5 DENCKLGVD----LWYKESNNYDFQSPGYS------PATGHFTQLVWKASTRMG 48
>SB_3100| Best HMM Match : SCP (HMM E-Value=1.5e-20)
Length = 191
Score = 30.7 bits (66), Expect = 0.75
Identities = 16/64 (25%), Positives = 31/64 (48%)
Frame = +1
Query: 322 GENLYWYSTTDSTYKLNVDNAMESWFNEYKDYKYAPLKQSDFDKSKPKIGHYTQMAWSES 501
GENL + ++ L + A+ W++E Y + KQ + + GH+T + W ++
Sbjct: 74 GENLIYRCSSGPGEVLPAEKAVTDWYDEICMYNF---KQPGY---YSRTGHFTALVWKDT 127
Query: 502 THVG 513
+G
Sbjct: 128 KELG 131
>SB_41991| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 779
Score = 30.3 bits (65), Expect = 1.00
Identities = 18/56 (32%), Positives = 31/56 (55%)
Frame = +1
Query: 316 QTGENLYWYSTTDSTYKLNVDNAMESWFNEYKDYKYAPLKQSDFDKSKPKIGHYTQ 483
Q GENLY + S+ + ++A + W+ E DY + + +++S IGH+TQ
Sbjct: 731 QYGENLY--GSVSSSGAGSCEDATDLWYAEIADYDW-----NYYNQSTGVIGHFTQ 779
>SB_6144| Best HMM Match : SCP (HMM E-Value=4.6e-38)
Length = 468
Score = 30.3 bits (65), Expect = 1.00
Identities = 15/53 (28%), Positives = 25/53 (47%)
Frame = +1
Query: 355 STYKLNVDNAMESWFNEYKDYKYAPLKQSDFDKSKPKIGHYTQMAWSESTHVG 513
S K+ D + + D Y + DF+ +P IG ++Q+ W ST +G
Sbjct: 181 SNTKIECDGTQDDGI-QVVDSWYKDVCNYDFNAHQPVIGLFSQLVWKSSTSLG 232
Score = 29.1 bits (62), Expect = 2.3
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +1
Query: 421 YAPLKQSDFDKSKPKIGHYTQMAWSESTHVG 513
Y + DF+ +P IG ++Q+ W ST +G
Sbjct: 2 YKDVCNYDFNTHQPVIGLFSQLVWKSSTSLG 32
>SB_17372| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 364
Score = 29.9 bits (64), Expect = 1.3
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +1
Query: 382 AMESWFNEYKDYKYAPLKQSDFDKSKPKIGHYTQMAWSESTHVG 513
A+E W+ E Y + ++ GH+TQ+ W EST +G
Sbjct: 282 AVEMWYKEVCMYNF------NYGGMSGATGHFTQLVWKESTLLG 319
>SB_11891| Best HMM Match : F5_F8_type_C (HMM E-Value=4.7e-35)
Length = 1171
Score = 29.9 bits (64), Expect = 1.3
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +2
Query: 299 WDREDSRLVKICIGIQRPIAHTN*MWTTLWRVG 397
WD + +V+ C G RPI +W+ L++ G
Sbjct: 115 WDYMEDNIVRFCEGTIRPILSEEGVWSPLYKSG 147
>SB_4646| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 329
Score = 29.5 bits (63), Expect = 1.7
Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = -3
Query: 185 DT*PLASNCLL*LCPL-TKSLICLHDKFSRDLLWTCP 78
D P + +L +CP T+ ++ + +F+RD+L TCP
Sbjct: 82 DLCPRGTRDMLEMCPRGTRDMLVMCPRFNRDMLETCP 118
>SB_12270| Best HMM Match : Big_2 (HMM E-Value=8.1)
Length = 112
Score = 28.7 bits (61), Expect = 3.0
Identities = 10/19 (52%), Positives = 17/19 (89%)
Frame = +2
Query: 404 NIKITNMLP*NRVTSTSLN 460
N+K+TN++P +RVTS ++N
Sbjct: 46 NVKLTNIMPSSRVTSVTIN 64
>SB_4966| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1044
Score = 28.7 bits (61), Expect = 3.0
Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Frame = +1
Query: 373 VDNAMESWFNEYK-DYKYAPLKQSDFDKSKPKIGHYTQMAWSESTHVGC 516
+ A+ W++E K DY Y Q+ K +GH+ + W +GC
Sbjct: 511 IPGAVRGWYSEIKNDYNY----QTGKGNGKA-VGHFQAVVWKSIEKIGC 554
>SB_37501| Best HMM Match : SCP (HMM E-Value=1.2e-19)
Length = 351
Score = 28.3 bits (60), Expect = 4.0
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = +1
Query: 469 GHYTQMAWSESTHVG 513
GH+TQ+ W EST +G
Sbjct: 163 GHFTQVVWKESTELG 177
>SB_41| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 306
Score = 28.3 bits (60), Expect = 4.0
Identities = 9/28 (32%), Positives = 15/28 (53%)
Frame = -3
Query: 146 CPLTKSLICLHDKFSRDLLWTCPIHTTI 63
CP TK+ C H+K ++ + CP +
Sbjct: 235 CPFTKATCCTHNKCCKEGTFCCPTEPAV 262
>SB_57379| Best HMM Match : SCP (HMM E-Value=5.8e-19)
Length = 168
Score = 27.9 bits (59), Expect = 5.3
Identities = 13/44 (29%), Positives = 20/44 (45%)
Frame = +1
Query: 382 AMESWFNEYKDYKYAPLKQSDFDKSKPKIGHYTQMAWSESTHVG 513
A+E W +E DY S D + H+TQ+ W + +G
Sbjct: 97 AVEYWMDEKYDYHAKGYCLSPPDLPDSYLLHFTQVVWKATRRIG 140
>SB_15991| Best HMM Match : SCP (HMM E-Value=2.3e-23)
Length = 1189
Score = 27.5 bits (58), Expect = 7.0
Identities = 11/46 (23%), Positives = 22/46 (47%)
Frame = +1
Query: 376 DNAMESWFNEYKDYKYAPLKQSDFDKSKPKIGHYTQMAWSESTHVG 513
+ A+ +W+ E K+Y + S P H++Q+ W + +G
Sbjct: 412 ERAVRNWYQEVKNYDFKN------PHSDPSTSHFSQLVWKGTKKLG 451
>SB_21314| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 586
Score = 27.1 bits (57), Expect = 9.3
Identities = 9/29 (31%), Positives = 19/29 (65%)
Frame = +1
Query: 373 VDNAMESWFNEYKDYKYAPLKQSDFDKSK 459
VD++++SWF++Y D+ ++F+ K
Sbjct: 288 VDSSVKSWFDDYMDWAKVSKPAANFNAGK 316
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,660,961
Number of Sequences: 59808
Number of extensions: 328545
Number of successful extensions: 731
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 678
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 719
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1160542895
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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