Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_G03
         (520 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    25   0.62 
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   1.9  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   1.9  
DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    22   4.3  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    22   4.3  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    22   4.3  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    22   4.3  

>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 24.6 bits (51), Expect = 0.62
 Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
 Frame = -3

Query: 458 LDLSKSLCFKGAXXXXXXXLNQLSIALSTFSLYVLSVVEYQYKF---SPVW 315
           LD+   + F G          + S+AL+ FSL + S++ Y  +    +P W
Sbjct: 290 LDVQWRIPFNGIQMPNLMVFYEKSLALAAFSLMLTSILRYLQELHVDAPTW 340


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -1

Query: 502 WTQTMPSVCNGLF 464
           WT T P++C G+F
Sbjct: 495 WTITTPAICVGVF 507


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -1

Query: 502 WTQTMPSVCNGLF 464
           WT T P++C G+F
Sbjct: 548 WTITTPAICVGVF 560


>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = -1

Query: 364 CMCYRSLNTNTNFHQSGIFPIPKSCPGY 281
           C  YR L  N N+ +    P+P  C  +
Sbjct: 101 CNNYRKLYYNINYIEQIPIPVPIYCGNF 128


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 9/28 (32%), Positives = 12/28 (42%)
 Frame = -1

Query: 370 SVCMCYRSLNTNTNFHQSGIFPIPKSCP 287
           S   C   L      + +GI P+P  CP
Sbjct: 194 SALACAIMLGPRLGRYDNGIDPLPLGCP 221


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = -3

Query: 398 NQLSIALSTFSLYVLSVVEYQYKFS 324
           N LSI  ST ++YVLS    Q  FS
Sbjct: 349 NDLSIDRSTNTMYVLSDNFQQLLFS 373


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = +1

Query: 361 YKLNVDNAMESWFNEYKDYKYAPLKQSDFDKSKP 462
           ++++++N   +  N+YKDY Y  +     DK  P
Sbjct: 130 FQMSINNTNNNNTNKYKDY-YIWVDPVKDDKGNP 162


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,501
Number of Sequences: 438
Number of extensions: 3185
Number of successful extensions: 17
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14477538
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)