Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_G03
(520 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g25790.1 68417.m03711 allergen V5/Tpx-1-related family protei... 49 2e-06
At4g25780.1 68417.m03710 pathogenesis-related protein, putative ... 48 3e-06
At5g26130.1 68418.m03108 pathogenesis-related protein, putative ... 44 5e-05
At3g09590.1 68416.m01139 pathogenesis-related protein, putative ... 43 1e-04
At5g57625.1 68418.m07199 allergen V5/Tpx-1-related family protei... 42 2e-04
At4g30320.1 68417.m04310 allergen V5/Tpx-1-related family protei... 42 2e-04
At2g14580.1 68415.m01633 pathogenesis-related protein, putative ... 42 2e-04
At4g33720.1 68417.m04788 pathogenesis-related protein, putative ... 42 2e-04
At3g19690.1 68416.m02494 pathogenesis-related protein, putative ... 42 2e-04
At5g02730.1 68418.m00214 allergen V5/Tpx-1-related family protei... 41 6e-04
At4g31470.1 68417.m04471 pathogenesis-related protein, putative ... 41 6e-04
At4g33710.1 68417.m04787 pathogenesis-related protein, putative ... 40 0.001
At2g14610.1 68415.m01643 pathogenesis-related protein 1 (PR-1) i... 39 0.002
At1g50060.1 68414.m05617 pathogenesis-related protein, putative ... 38 0.003
At2g19980.1 68415.m02336 allergen V5/Tpx-1-related family protei... 37 0.007
At1g01310.1 68414.m00047 allergen V5/Tpx-1-related family protei... 37 0.009
At2g19990.1 68415.m02337 pathogenesis-related protein 1 (PR-1) i... 36 0.022
At5g66590.1 68418.m08394 allergen V5/Tpx-1-related family protei... 33 0.087
At1g50050.1 68414.m05616 pathogenesis-related protein, putative ... 33 0.087
At2g19970.1 68415.m02335 pathogenesis-related protein, putative ... 31 0.61
At4g33730.1 68417.m04789 pathogenesis-related protein, putative ... 30 0.81
At2g26060.1 68415.m03129 transducin family protein / WD-40 repea... 29 1.4
At1g21750.2 68414.m02723 protein disulfide isomerase, putative s... 29 2.5
At1g21750.1 68414.m02722 protein disulfide isomerase, putative s... 29 2.5
At4g34210.1 68417.m04856 E3 ubiquitin ligase SCF complex subunit... 28 4.3
At4g32990.1 68417.m04692 transducin family protein / WD-40 repea... 27 7.6
At4g22745.1 68417.m03282 methyl-CpG-binding domain-containing pr... 27 7.6
>At4g25790.1 68417.m03711 allergen V5/Tpx-1-related family protein
similar to SP|Q40374 Pathogenesis-related protein PR-1
precursor {Medicago truncatula}; contains Pfam profile
PF00188: SCP-like extracellular protein
Length = 210
Score = 48.8 bits (111), Expect = 2e-06
Identities = 31/101 (30%), Positives = 49/101 (48%)
Frame = +1
Query: 217 MVWDEELXXXXXXXXXQNKNFHNPDKTLGSGRFQTGENLYWYSTTDSTYKLNVDNAMESW 396
+VWD ++ Q + ++ T +G + GENL+W S +D T A+ESW
Sbjct: 94 LVWDVKIASYATWWANQRR--YDCSLTHSTGPY--GENLFWGSGSDFTSTF----AVESW 145
Query: 397 FNEYKDYKYAPLKQSDFDKSKPKIGHYTQMAWSESTHVGCA 519
E K Y + ++ + GHYTQ+ W E+ +GCA
Sbjct: 146 TVEAKSYNH----MTNTCEGDGMCGHYTQIVWRETRRLGCA 182
>At4g25780.1 68417.m03710 pathogenesis-related protein, putative
similar to gene PR-1 protein - Medicago truncatula,
SP|Q40374; contains Pfam profile PF00188: SCP-like
extracellular protein
Length = 190
Score = 48.4 bits (110), Expect = 3e-06
Identities = 29/102 (28%), Positives = 45/102 (44%), Gaps = 1/102 (0%)
Frame = +1
Query: 217 MVWDEELXXXXXXXXXQNKNFHNPDKTLGSGRFQTGENLYW-YSTTDSTYKLNVDNAMES 393
++WD L Q + ++ +G F GEN+YW Y S +A+ +
Sbjct: 71 LIWDRRLQNYAQGWANQRRGDCALRHSVSNGEFNLGENIYWGYGANWSPA-----DAVVA 125
Query: 394 WFNEYKDYKYAPLKQSDFDKSKPKIGHYTQMAWSESTHVGCA 519
W +E + Y Y S+ + GHYTQ+ W + VGCA
Sbjct: 126 WASEKRFYHYG----SNTCDAGQMCGHYTQIVWKSTRRVGCA 163
>At5g26130.1 68418.m03108 pathogenesis-related protein, putative
similar to PR-1a protein [Nicotiana tabacum] GI:19944;
contains Pfam profile PF00188: SCP-like extracellular
protein
Length = 164
Score = 44.4 bits (100), Expect = 5e-05
Identities = 28/66 (42%), Positives = 33/66 (50%)
Frame = +1
Query: 322 GENLYWYSTTDSTYKLNVDNAMESWFNEYKDYKYAPLKQSDFDKSKPKIGHYTQMAWSES 501
GENL W S L+ A++ W NE DY YA SD + GHYTQ+ W S
Sbjct: 81 GENLAW-----SGGALSGAEAVKLWVNEKSDYIYASNTCSD----GKQCGHYTQVVWRTS 131
Query: 502 THVGCA 519
VGCA
Sbjct: 132 EWVGCA 137
>At3g09590.1 68416.m01139 pathogenesis-related protein, putative
similar to SP|Q05968 Pathogenesis-related protein 1
precursor {Hordeum vulgare}; contains Pfam profile
PF00188: SCP-like extracellular protein
Length = 186
Score = 43.2 bits (97), Expect = 1e-04
Identities = 29/99 (29%), Positives = 44/99 (44%)
Frame = +1
Query: 223 WDEELXXXXXXXXXQNKNFHNPDKTLGSGRFQTGENLYWYSTTDSTYKLNVDNAMESWFN 402
WD +L Q K+ D ++ GEN++W+ + + + + WF
Sbjct: 71 WDRDLARFADKWAKQRKS----DCSMIHSGGPYGENIFWHRRKKTW---SPEKVVTRWFE 123
Query: 403 EYKDYKYAPLKQSDFDKSKPKIGHYTQMAWSESTHVGCA 519
E +Y +K + K GHYTQM W E+T VGCA
Sbjct: 124 ERFNYD---VKTNTCAPGK-MCGHYTQMVWRETTAVGCA 158
>At5g57625.1 68418.m07199 allergen V5/Tpx-1-related family protein
low similarity to SP|Q40374 Pathogenesis-related protein
PR-1 precursor {Medicago truncatula}; contains Pfam
profile PF00188: SCP-like extracellular protein
Length = 207
Score = 42.3 bits (95), Expect = 2e-04
Identities = 30/101 (29%), Positives = 49/101 (48%)
Frame = +1
Query: 217 MVWDEELXXXXXXXXXQNKNFHNPDKTLGSGRFQTGENLYWYSTTDSTYKLNVDNAMESW 396
++WD +L Q + ++ T +G + GENL+W S S++ A++SW
Sbjct: 91 LIWDGKLASYATWWANQRR--YDCSLTHSTGPY--GENLFWGS--GSSWAPGF--AVQSW 142
Query: 397 FNEYKDYKYAPLKQSDFDKSKPKIGHYTQMAWSESTHVGCA 519
E + Y + + D S GHYTQM W ++ +GCA
Sbjct: 143 IVEGRSYNH---NTNSCDGSG-MCGHYTQMVWRDTKRLGCA 179
>At4g30320.1 68417.m04310 allergen V5/Tpx-1-related family protein
similar to SP|Q40374 Pathogenesis-related protein PR-1
precursor {Medicago truncatula}; contains Pfam profile
PF00188: SCP-like extracellular protein
Length = 161
Score = 42.3 bits (95), Expect = 2e-04
Identities = 33/123 (26%), Positives = 50/123 (40%)
Frame = +1
Query: 151 YRRQLLAKGQVSGHPAATEMKYMVWDEELXXXXXXXXXQNKNFHNPDKTLGSGRFQTGEN 330
Y+ Q + G + A +K + WD +L Q + D L GEN
Sbjct: 26 YQEQFM--GPQNAARAHLRLKPLKWDAKLARYAQWWANQRRG----DCALTHSNGPYGEN 79
Query: 331 LYWYSTTDSTYKLNVDNAMESWFNEYKDYKYAPLKQSDFDKSKPKIGHYTQMAWSESTHV 510
L+W S + A W +E + Y Y +S+ S+ GHYTQ+ W + +
Sbjct: 80 LFWGSGN----RWGPSQAAYGWLSEARSYNY----RSNSCNSE-MCGHYTQIVWKNTQKI 130
Query: 511 GCA 519
GCA
Sbjct: 131 GCA 133
>At2g14580.1 68415.m01633 pathogenesis-related protein, putative
similar to SP|P33154 Pathogenesis-related protein 1
precursor (PR-1) {Arabidopsis thaliana}; contains Pfam
profile PF00188: SCP-like extracellular protein
Length = 161
Score = 42.3 bits (95), Expect = 2e-04
Identities = 40/131 (30%), Positives = 49/131 (37%)
Frame = +1
Query: 127 KDFVNGHNYRRQLLAKGQVSGHPAATEMKYMVWDEELXXXXXXXXXQNKNFHNPDKTLGS 306
+D+VN HN R + G M WDE L Q K D L
Sbjct: 31 QDYVNAHNQARSQIGVGP------------MQWDEGLAAYARNYANQLKG----DCRLVH 74
Query: 307 GRFQTGENLYWYSTTDSTYKLNVDNAMESWFNEYKDYKYAPLKQSDFDKSKPKIGHYTQM 486
R GENL S L+ A+ W NE +Y Y D + GHYTQ+
Sbjct: 75 SRGPYGENL-----AKSGGDLSGVAAVNLWVNEKANYNY------DTNTCNGVCGHYTQV 123
Query: 487 AWSESTHVGCA 519
W S +GCA
Sbjct: 124 VWRNSVRLGCA 134
>At4g33720.1 68417.m04788 pathogenesis-related protein, putative
similar to SP|P33154 Pathogenesis-related protein 1
precursor (PR-1) {Arabidopsis thaliana}; contains Pfam
profile PF00188: SCP-like extracellular protein
Length = 163
Score = 41.9 bits (94), Expect = 2e-04
Identities = 29/99 (29%), Positives = 42/99 (42%)
Frame = +1
Query: 223 WDEELXXXXXXXXXQNKNFHNPDKTLGSGRFQTGENLYWYSTTDSTYKLNVDNAMESWFN 402
WDE++ Q K D + GEN+ W S+ + A++ W +
Sbjct: 51 WDEKVAAYARNYANQRKG----DCAMKHSSGSYGENIAW-----SSGSMTGVAAVDMWVD 101
Query: 403 EYKDYKYAPLKQSDFDKSKPKIGHYTQMAWSESTHVGCA 519
E DY Y +DK + GHYTQ+ W S +GCA
Sbjct: 102 EQFDYDYDS-NTCAWDK---QCGHYTQVVWRNSERLGCA 136
>At3g19690.1 68416.m02494 pathogenesis-related protein, putative
similar to PR-1a protein GI:19944 GB:X06930 from
[Nicotiana tabacum]; contains Pfam profile PF00188:
SCP-like extracellular protein
Length = 161
Score = 41.9 bits (94), Expect = 2e-04
Identities = 28/101 (27%), Positives = 44/101 (43%)
Frame = +1
Query: 217 MVWDEELXXXXXXXXXQNKNFHNPDKTLGSGRFQTGENLYWYSTTDSTYKLNVDNAMESW 396
+VWD+E+ Q N D L GEN+ S+ +++ ++A E W
Sbjct: 45 LVWDDEVAAYAASYANQRIN----DCALVHSNGPFGENIAM-----SSGEMSAEDAAEMW 95
Query: 397 FNEYKDYKYAPLKQSDFDKSKPKIGHYTQMAWSESTHVGCA 519
NE + Y Y + D + HYTQ+ W + +GCA
Sbjct: 96 INEKQYYDYD--SNTCNDPNGGTCLHYTQVVWKNTVRLGCA 134
>At5g02730.1 68418.m00214 allergen V5/Tpx-1-related family protein
low similarity to SP|Q05968 Pathogenesis-related protein
1 precursor {Hordeum vulgare}; contains Pfam profile
PF00188: SCP-like extracellular protein
Length = 205
Score = 40.7 bits (91), Expect = 6e-04
Identities = 28/99 (28%), Positives = 46/99 (46%)
Frame = +1
Query: 223 WDEELXXXXXXXXXQNKNFHNPDKTLGSGRFQTGENLYWYSTTDSTYKLNVDNAMESWFN 402
WD+ L Q K+ + T G + GEN++ Y +++ V ++ W +
Sbjct: 78 WDQGLARFASKWAKQRKS--DCKMTHSGGPY--GENIFRYQRSENWSPRRV---VDKWMD 130
Query: 403 EYKDYKYAPLKQSDFDKSKPKIGHYTQMAWSESTHVGCA 519
E +Y + ++ KS GHYTQ+ W +T VGCA
Sbjct: 131 ESLNYD----RVANTCKSGAMCGHYTQIVWRTTTAVGCA 165
>At4g31470.1 68417.m04471 pathogenesis-related protein, putative
similar to pathogenesis related protein-1 from Zea mays
GI:3290004; contains Pfam profile PF00188: SCP-like
extracellular protein
Length = 185
Score = 40.7 bits (91), Expect = 6e-04
Identities = 22/66 (33%), Positives = 36/66 (54%)
Frame = +1
Query: 322 GENLYWYSTTDSTYKLNVDNAMESWFNEYKDYKYAPLKQSDFDKSKPKIGHYTQMAWSES 501
GENL+W S T + +A+ +W +E K Y +++ K+ HYTQ+ W +S
Sbjct: 101 GENLFWGSGKGWTPR----DAVAAWASEMKYYD----RRTSHCKANGDCLHYTQLVWKKS 152
Query: 502 THVGCA 519
+ +GCA
Sbjct: 153 SRIGCA 158
>At4g33710.1 68417.m04787 pathogenesis-related protein, putative
similar to PR-1a protein [Nicotiana tabacum] GI:19944;
contains Pfam profile PF00188: SCP-like extracellular
protein
Length = 166
Score = 39.9 bits (89), Expect = 0.001
Identities = 24/72 (33%), Positives = 37/72 (51%)
Frame = +1
Query: 304 SGRFQTGENLYWYSTTDSTYKLNVDNAMESWFNEYKDYKYAPLKQSDFDKSKPKIGHYTQ 483
+ R + GENL W S+ ++ A+ W E DY + +S+ ++ + GHYTQ
Sbjct: 77 NSRGRYGENLAW-----SSGDMSGAAAVRLWVREKSDYFH----KSNTCRAGKQCGHYTQ 127
Query: 484 MAWSESTHVGCA 519
+ W S VGCA
Sbjct: 128 VVWKNSEWVGCA 139
>At2g14610.1 68415.m01643 pathogenesis-related protein 1 (PR-1)
identical to GB:M90508 SP|P33154
Length = 161
Score = 38.7 bits (86), Expect = 0.002
Identities = 30/101 (29%), Positives = 42/101 (41%)
Frame = +1
Query: 217 MVWDEELXXXXXXXXXQNKNFHNPDKTLGSGRFQTGENLYWYSTTDSTYKLNVDNAMESW 396
M WDE + Q + N G + GENL W S L+ +A+ W
Sbjct: 49 MQWDERVAAYARSYAEQLRG--NCRLIHSGGPY--GENLAWGSGD-----LSGVSAVNMW 99
Query: 397 FNEYKDYKYAPLKQSDFDKSKPKIGHYTQMAWSESTHVGCA 519
+E +Y YA + GHYTQ+ W +S +GCA
Sbjct: 100 VSEKANYNYAA------NTCNGVCGHYTQVVWRKSVRLGCA 134
>At1g50060.1 68414.m05617 pathogenesis-related protein, putative
similar to prb-1b [Nicotiana tabacum] GI:19970; contains
Pfam profile PF00188: SCP-like extracellular protein
Length = 161
Score = 38.3 bits (85), Expect = 0.003
Identities = 38/131 (29%), Positives = 55/131 (41%)
Frame = +1
Query: 127 KDFVNGHNYRRQLLAKGQVSGHPAATEMKYMVWDEELXXXXXXXXXQNKNFHNPDKTLGS 306
+D++N HN A+ QV G P +VWD L NF D L
Sbjct: 28 QDYLNSHN-----TARAQV-GVPN------VVWDTTLAAYALNYS----NFRKADCNLVH 71
Query: 307 GRFQTGENLYWYSTTDSTYKLNVDNAMESWFNEYKDYKYAPLKQSDFDKSKPKIGHYTQM 486
GENL S+ + +A++ W +E Y YA ++ K + HYTQ+
Sbjct: 72 SNGPYGENL----AKGSSSSFSAISAVKLWVDEKPYYSYA---YNNCTGGKQCL-HYTQV 123
Query: 487 AWSESTHVGCA 519
W +S +GCA
Sbjct: 124 VWRDSVKIGCA 134
>At2g19980.1 68415.m02336 allergen V5/Tpx-1-related family protein
low similarity to SP|P33154 Pathogenesis-related protein
1 precursor (PR-1) {Arabidopsis thaliana}; contains Pfam
profile PF00188: SCP-like extracellular protein
Length = 165
Score = 37.1 bits (82), Expect = 0.007
Identities = 19/45 (42%), Positives = 25/45 (55%)
Frame = +1
Query: 382 AMESWFNEYKDYKYAPLKQSDFDKSKPKIGHYTQMAWSESTHVGC 516
A + WF E Y YA K S+ GHYTQ+ ++STH+GC
Sbjct: 97 ATKFWFTEKPYYNYATNKCSE------PCGHYTQIVANQSTHLGC 135
>At1g01310.1 68414.m00047 allergen V5/Tpx-1-related family protein
similar to pathogenesis related protein-1 GB:AAC25629
GI:3290004 from [Zea mays]; contains Pfam profile
PF00188: SCP-like extracellular protein
Length = 241
Score = 36.7 bits (81), Expect = 0.009
Identities = 20/66 (30%), Positives = 34/66 (51%)
Frame = +1
Query: 322 GENLYWYSTTDSTYKLNVDNAMESWFNEYKDYKYAPLKQSDFDKSKPKIGHYTQMAWSES 501
GEN++W + + + + + W +E K Y + + + + GHYTQ+ W +S
Sbjct: 135 GENIFWAGKNNWSPR----DIVNVWADEDKFYDV----KGNTCEPQHMCGHYTQIVWRDS 186
Query: 502 THVGCA 519
T VGCA
Sbjct: 187 TKVGCA 192
>At2g19990.1 68415.m02337 pathogenesis-related protein 1 (PR-1)
identical to pathogenesis-related protein 1 {Arabidopsis
thaliana} GI:166805; contains an extracellular proteins
SCP/Tpx-1/Ag5/PR-1/Sc7 signature (PDOC00772)
Length = 176
Score = 35.5 bits (78), Expect = 0.022
Identities = 17/46 (36%), Positives = 23/46 (50%)
Frame = +1
Query: 382 AMESWFNEYKDYKYAPLKQSDFDKSKPKIGHYTQMAWSESTHVGCA 519
A E W E ++Y Y S+ GHYTQ+ W +S +GCA
Sbjct: 107 ATEYWMTEKENYDY----DSNTCGGDGVCGHYTQIVWRDSVRLGCA 148
>At5g66590.1 68418.m08394 allergen V5/Tpx-1-related family protein
contains similarity to SP|Q41495 STS14 protein precursor
{Solanum tuberosum}; contains Pfam profile PF00188:
SCP-like extracellular protein
Length = 185
Score = 33.5 bits (73), Expect = 0.087
Identities = 25/102 (24%), Positives = 39/102 (38%), Gaps = 1/102 (0%)
Frame = +1
Query: 217 MVWDEELXXXXXXXXXQNKNFHNPD-KTLGSGRFQTGENLYWYSTTDSTYKLNVDNAMES 393
+VW + L +N + +L G++ G N W + A+E+
Sbjct: 65 LVWSQTLEAAASRLARYQRNQKKCEFASLNPGKY--GANQLW---AKGLVAVTPSLAVET 119
Query: 394 WFNEYKDYKYAPLKQSDFDKSKPKIGHYTQMAWSESTHVGCA 519
W E Y Y +SD + G Y Q+ W S +GCA
Sbjct: 120 WVKEKPFYNY----KSDTCAANHTCGVYKQVVWRNSKELGCA 157
>At1g50050.1 68414.m05616 pathogenesis-related protein, putative
similar to pathogenesis-related protein 1b precursor
(pr-1b) GB:X03465 GI:19977 from [Nicotiana tabacum];
contains Pfam profile PF00188: SCP-like extracellular
protein
Length = 226
Score = 33.5 bits (73), Expect = 0.087
Identities = 17/46 (36%), Positives = 21/46 (45%)
Frame = +1
Query: 382 AMESWFNEYKDYKYAPLKQSDFDKSKPKIGHYTQMAWSESTHVGCA 519
A+ W NE Y Y + K HYTQ+ WS S +GCA
Sbjct: 94 AVNLWVNEKPYYNYTANACIGAQQCK----HYTQVVWSNSVKIGCA 135
>At2g19970.1 68415.m02335 pathogenesis-related protein, putative
similar to pathogenesis-related protein 1 {Arabidopsis
thaliana} GI:166805; contains Pfam profile PF00188:
SCP-like extracellular protein
Length = 177
Score = 30.7 bits (66), Expect = 0.61
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = +1
Query: 382 AMESWFNEYKDYKYAPLKQSDFDKSKPKIGHYTQMAWSESTHVGC 516
A + W E +Y +A +K K GHYTQM ++S +GC
Sbjct: 109 AAKYWLTEKPNYDHAT------NKCKDVCGHYTQMVANQSLSLGC 147
>At4g33730.1 68417.m04789 pathogenesis-related protein, putative
similar to SP|P33154 Pathogenesis-related protein 1
precursor (PR-1) {Arabidopsis thaliana}; contains Pfam
profile PF00188: SCP-like extracellular protein
Length = 172
Score = 30.3 bits (65), Expect = 0.81
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +1
Query: 460 PKIGHYTQMAWSESTHVGC 516
P GHYTQ+ W S +GC
Sbjct: 126 PACGHYTQVVWRGSARLGC 144
>At2g26060.1 68415.m03129 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to WD40-repeat containing protein Ciao 1
(SP:O76071) [Homo sapiens]
Length = 352
Score = 29.5 bits (63), Expect = 1.4
Identities = 11/40 (27%), Positives = 22/40 (55%)
Frame = +1
Query: 304 SGRFQTGENLYWYSTTDSTYKLNVDNAMESWFNEYKDYKY 423
+G Q + + W+ T D + + DN ++ W++E D +Y
Sbjct: 160 TGHTQDVKMVQWHPTMDVLFSCSYDNTIKVWWSEDDDGEY 199
>At1g21750.2 68414.m02723 protein disulfide isomerase, putative
similar to SP|P29828 Protein disulfide isomerase
precursor (PDI) (EC 5.3.4.1) {Medicago sativa}; isoform
contains non-consensus GA donor splice site at intron 9
Length = 487
Score = 28.7 bits (61), Expect = 2.5
Identities = 15/32 (46%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
Frame = +1
Query: 352 DSTY-KLNVD-NAMESWFNEYKDYKYAPLKQS 441
D Y K NV+ + +ESW ++KD K AP K+S
Sbjct: 334 DKKYLKTNVEVDQIESWVKDFKDGKIAPHKKS 365
>At1g21750.1 68414.m02722 protein disulfide isomerase, putative
similar to SP|P29828 Protein disulfide isomerase
precursor (PDI) (EC 5.3.4.1) {Medicago sativa}; isoform
contains non-consensus GA donor splice site at intron 9
Length = 501
Score = 28.7 bits (61), Expect = 2.5
Identities = 15/32 (46%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
Frame = +1
Query: 352 DSTY-KLNVD-NAMESWFNEYKDYKYAPLKQS 441
D Y K NV+ + +ESW ++KD K AP K+S
Sbjct: 334 DKKYLKTNVEVDQIESWVKDFKDGKIAPHKKS 365
>At4g34210.1 68417.m04856 E3 ubiquitin ligase SCF complex subunit
SKP1/ASK1 (At11), putative E3 ubiquitin ligase; similar
to Skp1 homolog Skp1a GI:3068807 from [Arabidopsis
thaliana]
Length = 152
Score = 27.9 bits (59), Expect = 4.3
Identities = 9/30 (30%), Positives = 20/30 (66%)
Frame = +1
Query: 55 ILAMVVCIGHVHSKSLLNLSCKQIKDFVNG 144
I +++ +++ KSLL+L+C+ + D + G
Sbjct: 90 IFELILAANYLNIKSLLDLTCQTVADMIKG 119
>At4g32990.1 68417.m04692 transducin family protein / WD-40 repeat
family protein HIRA protein, Drosophila melanogaster,
PID:e1250847
Length = 318
Score = 27.1 bits (57), Expect = 7.6
Identities = 10/40 (25%), Positives = 21/40 (52%)
Frame = +1
Query: 304 SGRFQTGENLYWYSTTDSTYKLNVDNAMESWFNEYKDYKY 423
+G + + + W+ T D + + DN ++ W +E +D Y
Sbjct: 136 TGHSEDVKMVLWHPTMDVLFSCSYDNTIKIWCSEDEDGDY 175
>At4g22745.1 68417.m03282 methyl-CpG-binding domain-containing
protein contains Pfam profile PF01429: Methyl-CpG
binding domain
Length = 204
Score = 27.1 bits (57), Expect = 7.6
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = +1
Query: 340 YSTTDSTYKLNVDNAMESWFNEYKDYKYAPLKQSDFDKSKPKI 468
Y T + KL N + ++ + +DYKYA L DF+ + PK+
Sbjct: 140 YYITPTGKKLKSRNEIAAFIDANQDYKYALL--GDFNFTVPKV 180
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,595,129
Number of Sequences: 28952
Number of extensions: 233922
Number of successful extensions: 566
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 556
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 562
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 947539968
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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