Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_G01
         (507 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.          23   1.4  
M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee homeobox-...    22   4.2  
AF134816-1|AAD40232.1|   50|Apis mellifera unknown protein.            22   4.2  

>AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.
          Length = 148

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = -2

Query: 152 LLPAPQNSAARTHQTLSARIVGSHPLSLSFCPSRKYGSLG 33
           L+  P  + +  H  + A  V  + LSLS  P   +GS G
Sbjct: 2   LVARPMQALSIRHAVILASFVWIYALSLSLPPLFGWGSYG 41


>M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H55. ).
          Length = 86

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 7/23 (30%), Positives = 12/23 (52%)
 Frame = +3

Query: 24  VCLTQRSVFSTWAKRERQWMTSH 92
           +CLT+R +   +  R  +W   H
Sbjct: 45  LCLTERQIKIWFQNRRMKWKKEH 67


>AF134816-1|AAD40232.1|   50|Apis mellifera unknown protein.
          Length = 50

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 5/18 (27%), Positives = 12/18 (66%)
 Frame = +1

Query: 316 PRHSSACAYWTAHYVCTL 369
           P+  +   YW+ +++CT+
Sbjct: 31  PKDHNGSIYWSMYHLCTV 48


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,203
Number of Sequences: 438
Number of extensions: 3287
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13986774
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)