Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_G01
(507 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g66580.1 68414.m07565 60S ribosomal protein L10 (RPL10C) cont... 262 1e-70
At1g14320.1 68414.m01697 60S ribosomal protein L10 (RPL10A) / Wi... 260 3e-70
At1g26910.1 68414.m03281 60S ribosomal protein L10 (RPL10B) Near... 259 9e-70
At5g23575.1 68418.m02766 transmembrane protein, putative similar... 29 1.4
At4g20380.3 68417.m02976 zinc finger protein (LSD1) identical to... 29 1.8
At4g20380.2 68417.m02974 zinc finger protein (LSD1) identical to... 29 1.8
At4g20380.1 68417.m02975 zinc finger protein (LSD1) identical to... 29 1.8
At5g47870.1 68418.m05914 expressed protein 29 2.4
At5g13020.1 68418.m01492 emsy N terminus domain-containing prote... 29 2.4
At4g02180.1 68417.m00290 DC1 domain-containing protein contains ... 29 2.4
At5g24280.1 68418.m02856 expressed protein ; expression supporte... 28 3.1
At5g13030.1 68418.m01494 expressed protein contains Pfam profile... 28 3.1
At5g10650.1 68418.m01233 zinc finger (C3HC4-type RING finger) fa... 28 3.1
At2g01600.1 68415.m00084 epsin N-terminal homology (ENTH) domain... 28 3.1
At5g55800.1 68418.m06954 DC1 domain-containing protein contains ... 28 4.2
At5g02360.1 68418.m00159 DC1 domain-containing protein contains ... 27 5.5
At5g46660.1 68418.m05749 CHP-rich zinc finger protein, putative ... 27 7.3
At5g18370.1 68418.m02161 disease resistance protein (TIR-NBS-LRR... 27 7.3
At4g21490.1 68417.m03107 pyridine nucleotide-disulphide oxidored... 27 7.3
At3g19300.1 68416.m02448 protein kinase family protein contains ... 27 7.3
At4g12430.1 68417.m01967 trehalose-6-phosphate phosphatase, puta... 27 9.6
At1g19510.1 68414.m02430 myb family transcription factor contain... 27 9.6
>At1g66580.1 68414.m07565 60S ribosomal protein L10 (RPL10C)
contains Pfam profile: PF00826: Ribosomal L10
Length = 221
Score = 262 bits (641), Expect = 1e-70
Identities = 120/167 (71%), Positives = 138/167 (82%)
Frame = +2
Query: 5 EARFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEAGRICCNKYLVK 184
++R+CRGVPDPKIRI+D+G KR VD+FP CVHLVS E E +SSEALEA RI CNKY+VK
Sbjct: 19 KSRYCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMVK 78
Query: 185 NCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMSV 364
+ GKD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFGK GT ARV IGQ ++SV
Sbjct: 79 SAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKALGTCARVAIGQVLLSV 138
Query: 365 RSSDRWKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYEREEFEKLR 505
R D EALRRAKFKFPGRQKI VS+KWGFTK+ R E+ KLR
Sbjct: 139 RCKDNHGVHAQEALRRAKFKFPGRQKIIVSRKWGFTKFNRAEYTKLR 185
>At1g14320.1 68414.m01697 60S ribosomal protein L10 (RPL10A) /
Wilm's tumor suppressor protein-related similar to tumor
suppressor GI:575354 from [Oryza sativa]
Length = 220
Score = 260 bits (638), Expect = 3e-70
Identities = 120/167 (71%), Positives = 138/167 (82%)
Frame = +2
Query: 5 EARFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEAGRICCNKYLVK 184
++R+CRGVPDPKIRI+D+G KR VD+FP CVHLVS E E +SSEALEA RI CNKY+VK
Sbjct: 19 KSRYCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMVK 78
Query: 185 NCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMSV 364
+ GKD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFGK GT ARV IGQ ++SV
Sbjct: 79 SAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKALGTCARVAIGQVLLSV 138
Query: 365 RSSDRWKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYEREEFEKLR 505
R D EALRRAKFKFPGRQKI VS+KWGFTK+ R +F KLR
Sbjct: 139 RCKDAHGHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFNRADFTKLR 185
>At1g26910.1 68414.m03281 60S ribosomal protein L10 (RPL10B) Nearly
identical to ribosomal protein L10.e, Wilm's tumor
suppressor homologue, gi|17682 (Z15157), however
differences in sequence indicate this is a different
member of the L10 family
Length = 221
Score = 259 bits (634), Expect = 9e-70
Identities = 119/167 (71%), Positives = 138/167 (82%)
Frame = +2
Query: 5 EARFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEAGRICCNKYLVK 184
++R+CRGVPDPKIRI+D+G KR VD+FP CVHLVS E E +SSEALEA RI CNKY+VK
Sbjct: 19 KSRYCRGVPDPKIRIYDVGMKRKGVDEFPYCVHLVSWEKENVSSEALEAARIACNKYMVK 78
Query: 185 NCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMSV 364
+ GKD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFGK GT ARV IGQ ++SV
Sbjct: 79 SAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKALGTCARVAIGQVLLSV 138
Query: 365 RSSDRWKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYEREEFEKLR 505
R D EALRRAKFKFPGRQKI VS+KWGFTK+ R ++ KLR
Sbjct: 139 RCKDAHGHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFNRADYTKLR 185
>At5g23575.1 68418.m02766 transmembrane protein, putative similar to
cleft lip and palate transmembrane protein 1 [Homo
sapiens] GI:4039014; contains Pfam profile PF05602:
Cleft lip and palate transmembrane protein 1 (CLPTM1)
Length = 593
Score = 29.5 bits (63), Expect = 1.4
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = -3
Query: 361 RHNGLSNTHTRYCALGFPERTTHPSLEPISSSARQHFI 248
++NG H + GFP T P +P++S +R H +
Sbjct: 127 QNNGSLYAHIFFARSGFPIDPTDPEYQPLNSFSRTHAV 164
>At4g20380.3 68417.m02976 zinc finger protein (LSD1) identical to
zinc-finger protein Lsd1 [Arabidopsis thaliana]
gi|1872521|gb|AAC49660
Length = 184
Score = 29.1 bits (62), Expect = 1.8
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
Frame = -2
Query: 224 VVSSGCGTDLY----RSSLRGTCCNRYGLLPAPQNSAARTHQTLSARIVGSH 81
++ GC T L SS+R +CC L+PA N A + A+I H
Sbjct: 46 IICGGCRTMLMYTRGASSVRCSCCQTTNLVPAHSNQVAHAPSSQVAQINCGH 97
>At4g20380.2 68417.m02974 zinc finger protein (LSD1) identical to
zinc-finger protein Lsd1 [Arabidopsis thaliana]
gi|1872521|gb|AAC49660
Length = 189
Score = 29.1 bits (62), Expect = 1.8
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
Frame = -2
Query: 224 VVSSGCGTDLY----RSSLRGTCCNRYGLLPAPQNSAARTHQTLSARIVGSH 81
++ GC T L SS+R +CC L+PA N A + A+I H
Sbjct: 51 IICGGCRTMLMYTRGASSVRCSCCQTTNLVPAHSNQVAHAPSSQVAQINCGH 102
>At4g20380.1 68417.m02975 zinc finger protein (LSD1) identical to
zinc-finger protein Lsd1 [Arabidopsis thaliana]
gi|1872521|gb|AAC49660
Length = 184
Score = 29.1 bits (62), Expect = 1.8
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
Frame = -2
Query: 224 VVSSGCGTDLY----RSSLRGTCCNRYGLLPAPQNSAARTHQTLSARIVGSH 81
++ GC T L SS+R +CC L+PA N A + A+I H
Sbjct: 46 IICGGCRTMLMYTRGASSVRCSCCQTTNLVPAHSNQVAHAPSSQVAQINCGH 97
>At5g47870.1 68418.m05914 expressed protein
Length = 199
Score = 28.7 bits (61), Expect = 2.4
Identities = 20/73 (27%), Positives = 30/73 (41%)
Frame = +2
Query: 212 RMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMSVRSSDRWKAQ 391
R++L PF + +N+ + C+G G+ G + V PI SS
Sbjct: 23 RIKLSPFRTVAVNRGVRCSGG-----GVGGGDAGKKKAVPNSNYVVPIDKFSSSSSITRP 77
Query: 392 VIEALRRAKFKFP 430
+IE LR K P
Sbjct: 78 LIEILRDLNKKIP 90
>At5g13020.1 68418.m01492 emsy N terminus domain-containing protein
/ ENT domain-containing protein contains Pfam profile
PF03735: ENT domain
Length = 397
Score = 28.7 bits (61), Expect = 2.4
Identities = 17/56 (30%), Positives = 30/56 (53%)
Frame = -3
Query: 424 LELSTTQSLNDLCLPTVT*AYRHNGLSNTHTRYCALGFPERTTHPSLEPISSSARQ 257
L+ S Q ++D P V+ + + S + A+G P + HPS++P SS+ R+
Sbjct: 123 LQSSVPQLVHDAPSPAVSGSRKKQKTSQSIASL-AMGPPSPSLHPSMQPSSSALRR 177
>At4g02180.1 68417.m00290 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 989
Score = 28.7 bits (61), Expect = 2.4
Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Frame = +2
Query: 134 SEALEAGRIC--CNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSC 265
S+A+ G C C+ + K CG+ I+ HP H +++ C
Sbjct: 65 SKAVSVGYYCKSCDFFAHKKCGESSEFIQHPSHPNHTLQLRSSEGC 110
Score = 27.1 bits (57), Expect = 7.3
Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = +2
Query: 131 SSEALEAGRIC--CNKYLVKNCGKDQFHIRMRLHPFHVIRINK 253
S E++ G C C+ ++ K CG+ I HP H + +N+
Sbjct: 369 SLESVTDGFYCKSCDIFIHKKCGESSGIIDHSSHPDHTLELNR 411
>At5g24280.1 68418.m02856 expressed protein ; expression supported by
MPSS
Length = 1634
Score = 28.3 bits (60), Expect = 3.1
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +2
Query: 110 SDEYEQLSSEALEAGRICCNKYLV 181
SDEY + SEA GR N++LV
Sbjct: 1431 SDEYRKFQSEAASLGRSITNRFLV 1454
>At5g13030.1 68418.m01494 expressed protein contains Pfam profile
PF02696: Uncharacterized ACR, YdiU/UPF0061 family
Length = 633
Score = 28.3 bits (60), Expect = 3.1
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +2
Query: 401 ALRRAKFKFPGRQKIYVSKKWGFTKYEREEFEKL 502
A+ R KF + +SKK G TKY +E KL
Sbjct: 455 AMERYGDKFMDEYQAIMSKKLGLTKYNKEVISKL 488
>At5g10650.1 68418.m01233 zinc finger (C3HC4-type RING finger)
family protein similar to Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 525
Score = 28.3 bits (60), Expect = 3.1
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = -2
Query: 74 SLSFCPSRKYGSLGQAH 24
SLSFCPS Y S G+ H
Sbjct: 327 SLSFCPSNIYSSTGRVH 343
>At2g01600.1 68415.m00084 epsin N-terminal homology (ENTH)
domain-containing protein contains Pfam PF01417: ENTH
domain. ENTH (Epsin N-terminal homology) domain; similar
to clathrin assembly protein AP180 (GI:6492344) [Xenopus
laevis]
Length = 571
Score = 28.3 bits (60), Expect = 3.1
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Frame = -3
Query: 298 THPSLEPISSSARQHFIDADDMEGV*S-HPDVELIFTA-VLYEVLVATD 158
T PS P S+ Q+FID DD+ G+ + PD +I L +V+TD
Sbjct: 358 TEPSPPPPPSANAQNFIDTDDLWGLNTGAPDTSVIEDQNALALAIVSTD 406
>At5g55800.1 68418.m06954 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 578
Score = 27.9 bits (59), Expect = 4.2
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = +2
Query: 158 ICCNKYLVKNCGKDQFHIRMRLHPFHVIRI 247
+ C K K C + F I HPFH +R+
Sbjct: 107 LICEKMFHKECVESPFEIIHPSHPFHSLRL 136
>At5g02360.1 68418.m00159 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 342
Score = 27.5 bits (58), Expect = 5.5
Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Frame = +2
Query: 62 KKRATVDDFPLCVHLVSDEYEQLSSEALEAGRICCNKYLVKNCG--KDQFHIRMRLHPFH 235
KK + PL + +++ EYE GR CCN ++CG + ++ + P+H
Sbjct: 255 KKHHALRPHPLTLTVITSEYEG------NVGRFCCNACQRESCGFVYEDLGAKIGVLPYH 308
>At5g46660.1 68418.m05749 CHP-rich zinc finger protein, putative
contains similarity to CHP-rich zinc finger protein
Length = 305
Score = 27.1 bits (57), Expect = 7.3
Identities = 11/32 (34%), Positives = 15/32 (46%)
Frame = +2
Query: 164 CNKYLVKNCGKDQFHIRMRLHPFHVIRINKML 259
C K K C + I+ HPFH +R+ L
Sbjct: 143 CQKNFHKECVQSPLEIKHPSHPFHSLRLYSYL 174
>At5g18370.1 68418.m02161 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1210
Score = 27.1 bits (57), Expect = 7.3
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +2
Query: 233 HVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQ 349
H+ RIN +L +D G+ G G + T+ARV Q
Sbjct: 240 HITRINSLLCLESSDVRMIGILGPPGIGKTTIARVLYDQ 278
>At4g21490.1 68417.m03107 pyridine nucleotide-disulphide
oxidoreductase family protein similar to GI:3718005
alternative NADH-dehydrogenase {Yarrowia lipolytica};
contains Pfam profile PF00070: Pyridine
nucleotide-disulphide oxidoreductase
Length = 568
Score = 27.1 bits (57), Expect = 7.3
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = +2
Query: 320 GTVARVRIGQPIMSVRSSDRWKAQVIEALRRAKFKF-PGRQKIYVSKKWGFTKYEREEFE 496
GTV + +PI ++ + +EA FK PG +K+Y K G ++EF+
Sbjct: 90 GTVEARSVVEPIRNIARKQNVEMSFLEA---ECFKIDPGSKKVYCRSKQGVNSKGKKEFD 146
>At3g19300.1 68416.m02448 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 663
Score = 27.1 bits (57), Expect = 7.3
Identities = 10/36 (27%), Positives = 18/36 (50%)
Frame = -3
Query: 421 ELSTTQSLNDLCLPTVT*AYRHNGLSNTHTRYCALG 314
+L T L ++C+ T++ G+ T +C LG
Sbjct: 76 DLGVTSDLTEICITTISRTMELYGIPRNATIFCGLG 111
>At4g12430.1 68417.m01967 trehalose-6-phosphate phosphatase,
putative similar to trehalose-6-phosphate phosphatase
(AtTPPB) [Arabidopsis thaliana] GI:2944180; contains
Pfam profile PF02358: Trehalose-phosphatase
Length = 368
Score = 26.6 bits (56), Expect = 9.6
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = -2
Query: 293 SQSGAYQLQRTTTFY*CG*HGRGVVSSGCGTDLYRSS 183
S+ YQL T Y G HG +++S G + ++S+
Sbjct: 151 SRDKVYQLVGLTELYYAGSHGMDIMTSSDGPNCFKST 187
>At1g19510.1 68414.m02430 myb family transcription factor contains
PFAM profile: PF00249 myb-like DNA binding domain
Length = 100
Score = 26.6 bits (56), Expect = 9.6
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +2
Query: 26 VPDPKIRIFDLGKKRATVDDFPL 94
VP PK + D+G K +DDF L
Sbjct: 69 VPLPKYKTVDVGSKSRGIDDFDL 91
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,773,493
Number of Sequences: 28952
Number of extensions: 250045
Number of successful extensions: 656
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 649
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 656
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 908059136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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