Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_F24
(525 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0319 + 22330477-22330504,22331817-22332198,22333015-22333192 214 4e-56
03_01_0382 + 2961665-2961672,2962504-2962557,2962935-2963004,296... 214 4e-56
11_06_0317 + 22326599-22326695,22327058-22327439,22328334-22328511 213 1e-55
03_03_0147 + 14838707-14838734,14839316-14839430,14839464-148396... 130 7e-31
07_03_1358 - 25984897-25984997,25985623-25985650 47 1e-05
07_03_1357 - 25982861-25983068,25983354-25983361 44 8e-05
04_04_1470 - 33818394-33818625,33819636-33819743,33819895-33820028 32 0.25
10_06_0085 + 10511258-10512327,10512978-10513058,10513318-105133... 29 3.0
10_02_0155 + 5937974-5939419,5939678-5939867,5940895-5941022 28 4.0
01_06_0939 - 33188620-33189252,33189570-33189680,33190460-331906... 28 4.0
08_02_0531 + 18256597-18256836,18257637-18257735,18258038-182581... 27 7.0
02_05_1008 - 33461225-33462334 27 7.0
10_01_0251 + 2641320-2643272 27 9.2
>11_06_0319 + 22330477-22330504,22331817-22332198,22333015-22333192
Length = 195
Score = 214 bits (522), Expect = 4e-56
Identities = 101/155 (65%), Positives = 123/155 (79%)
Frame = +3
Query: 60 FSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDP 239
+ KT+ PRRP+EK RLD ELK++GEYGLR KRE+WRV+Y L+RIR AR LLTL+EK+P
Sbjct: 10 YGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARHLLTLDEKNP 69
Query: 240 KRLFEGNAXXXXXXXXXXXDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARI 419
+R+FEG A + Q KLDYVL L +E+FL RRLQT VFKAG+AKSIHHAR+
Sbjct: 70 RRIFEGEALLRRMNRYGLLADGQNKLDYVLALTVENFLARRLQTLVFKAGMAKSIHHARV 129
Query: 420 LIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKS 524
LIRQRHIRV +Q+VNIPSF+VR++S KHIDFSL S
Sbjct: 130 LIRQRHIRVGRQIVNIPSFMVRVESEKHIDFSLTS 164
>03_01_0382 +
2961665-2961672,2962504-2962557,2962935-2963004,
2963141-2963386,2967246-2967491,2968837-2968888,
2969270-2969651,2970527-2970681,2971389-2971713,
2975803-2975871,2976189-2976346,2976444-2976551,
2976659-2977131
Length = 781
Score = 214 bits (522), Expect = 4e-56
Identities = 101/155 (65%), Positives = 123/155 (79%)
Frame = +3
Query: 60 FSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDP 239
+ KT+ PRRP+EK RLD ELK++GEYGLR KRE+WRV+Y L+RIR AR LLTL+EK+P
Sbjct: 226 YGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARHLLTLDEKNP 285
Query: 240 KRLFEGNAXXXXXXXXXXXDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARI 419
+R+FEG A + Q KLDYVL L +E+FL RRLQT VFKAG+AKSIHHAR+
Sbjct: 286 RRIFEGEALLRRMNRYGLLADGQNKLDYVLALTVENFLARRLQTLVFKAGMAKSIHHARV 345
Query: 420 LIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKS 524
LIRQRHIRV +Q+VNIPSF+VR++S KHIDFSL S
Sbjct: 346 LIRQRHIRVGRQIVNIPSFMVRVESEKHIDFSLTS 380
>11_06_0317 + 22326599-22326695,22327058-22327439,22328334-22328511
Length = 218
Score = 213 bits (519), Expect = 1e-55
Identities = 101/153 (66%), Positives = 122/153 (79%)
Frame = +3
Query: 66 KTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKR 245
KT+ PRRP+EK RLD ELK++GEYGLR KRE+WRV+Y L+RIR AR LLTL+EK+P+R
Sbjct: 35 KTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARHLLTLDEKNPRR 94
Query: 246 LFEGNAXXXXXXXXXXXDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILI 425
+FEG A + Q KLDYVL L +E+FL RRLQT VFKAG+AKSIHHAR+LI
Sbjct: 95 IFEGEALLRRMNRYGLLADGQNKLDYVLALTVENFLARRLQTLVFKAGMAKSIHHARVLI 154
Query: 426 RQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKS 524
RQRHIRV +Q+VNIPSF+VR++S KHIDFSL S
Sbjct: 155 RQRHIRVGRQIVNIPSFMVRVESEKHIDFSLTS 187
>03_03_0147 +
14838707-14838734,14839316-14839430,14839464-14839697,
14840571-14840667
Length = 157
Score = 130 bits (314), Expect = 7e-31
Identities = 68/127 (53%), Positives = 83/127 (65%)
Frame = +3
Query: 60 FSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDP 239
+ KT+ PRRP+EK R D ELK+ GEYGLR+K E+WRV+ ELLTL+EK+P
Sbjct: 10 YGKTFKKPRRPYEKERPDAELKLYGEYGLRSKCELWRVQ-----------ELLTLDEKNP 58
Query: 240 KRLFEGNAXXXXXXXXXXXDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARI 419
+R+FEG A E Q KLDYVL L +E+FL+ RLQT VFK G KSIHH +
Sbjct: 59 RRIFEGEALLRHMNRYGLLGEGQNKLDYVLALTVENFLQCRLQTIVFKNGTVKSIHHDHV 118
Query: 420 LIRQRHI 440
LIRQ HI
Sbjct: 119 LIRQHHI 125
>07_03_1358 - 25984897-25984997,25985623-25985650
Length = 42
Score = 46.8 bits (106), Expect = 1e-05
Identities = 18/28 (64%), Positives = 23/28 (82%)
Frame = +3
Query: 60 FSKTYVTPRRPFEKARLDQELKIIGEYG 143
+ KT+ PRRP+EK RLD ELK++GEYG
Sbjct: 10 YGKTFKKPRRPYEKERLDAELKLVGEYG 37
>07_03_1357 - 25982861-25983068,25983354-25983361
Length = 71
Score = 44.0 bits (99), Expect = 8e-05
Identities = 21/28 (75%), Positives = 24/28 (85%)
Frame = +3
Query: 441 RVRKQVVNIPSFIVRLDSGKHIDFSLKS 524
RV +Q+VNIPSFIVRL+S KHI FSL S
Sbjct: 3 RVGRQLVNIPSFIVRLESEKHIAFSLTS 30
>04_04_1470 - 33818394-33818625,33819636-33819743,33819895-33820028
Length = 157
Score = 32.3 bits (70), Expect = 0.25
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = +3
Query: 357 RRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 482
RRL T + K A+ + A I+Q H+RV + V P+F+V
Sbjct: 82 RRLATVMVKLKFAEHLKEAVTYIQQGHVRVGPETVTDPAFLV 123
>10_06_0085 +
10511258-10512327,10512978-10513058,10513318-10513396,
10514160-10514201
Length = 423
Score = 28.7 bits (61), Expect = 3.0
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +3
Query: 339 IEDFLERRLQTQVFKAGLAKSIHHAR 416
+ED+ E L T F A L KS+H AR
Sbjct: 110 VEDYFEGSLHTLDFLAALDKSLHRAR 135
>10_02_0155 + 5937974-5939419,5939678-5939867,5940895-5941022
Length = 587
Score = 28.3 bits (60), Expect = 4.0
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +2
Query: 371 SGVQGWSCEVNPSCPHLDQTEAY 439
+GV WS VNPS +L TEA+
Sbjct: 107 AGVSTWSLRVNPSSGNLHPTEAH 129
>01_06_0939 -
33188620-33189252,33189570-33189680,33190460-33190668,
33190781-33191078
Length = 416
Score = 28.3 bits (60), Expect = 4.0
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +3
Query: 114 QELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKD 236
Q L+ I G+ + +E++ + +L RIR R LT+E D
Sbjct: 212 QRLQTIHLLGIDDNQEIFTTQTSLTRIRAVPRYSLTIESLD 252
>08_02_0531 +
18256597-18256836,18257637-18257735,18258038-18258184,
18258295-18258427,18258521-18258585,18258792-18258962,
18259095-18259199,18259495-18259602,18259792-18260088,
18260191-18260256,18260477-18260679,18261178-18261232,
18261318-18261503,18261701-18261985
Length = 719
Score = 27.5 bits (58), Expect = 7.0
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Frame = +3
Query: 93 FEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAAR----ELLTLE 227
FE A+ ++ KII E R+ ++ +KY LA A ELL L+
Sbjct: 394 FEMAKQEESKKIISEEHQRSNEQITDLKYKLANCMNALESKNLELLNLQ 442
>02_05_1008 - 33461225-33462334
Length = 369
Score = 27.5 bits (58), Expect = 7.0
Identities = 20/69 (28%), Positives = 39/69 (56%)
Frame = +3
Query: 300 EKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFI 479
E Q+ L+Y+ G +E RR+ ++ F A +A+ + + +RHI V + + PS +
Sbjct: 163 ELQILLEYMDGGSLEG---RRIASEAFLADVARQVLSGIAYLHRRHI-VHRDIK--PSNL 216
Query: 480 VRLDSGKHI 506
+ +DSG+ +
Sbjct: 217 L-IDSGRRV 224
>10_01_0251 + 2641320-2643272
Length = 650
Score = 27.1 bits (57), Expect = 9.2
Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Frame = -2
Query: 227 LECQQFTGSLTDASERVLDAPHFTLVAETILSDDLQLLIKT-RLLERTSRSYVCFGKYRW 51
LE ++ TG+ + R++ FT+V IL D+ Q+ +KT + ER GK+R
Sbjct: 365 LEIKKITGNYS----RIIGKDMFTVVYSGILEDNTQVAVKTHNMFER--------GKWRC 412
Query: 50 YPVVHHLGELV 18
++ L EL+
Sbjct: 413 ANELNSLSELI 423
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,483,027
Number of Sequences: 37544
Number of extensions: 299166
Number of successful extensions: 818
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 793
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 817
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1154538620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -