Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_F24
(525 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_46749| Best HMM Match : No HMM Matches (HMM E-Value=.) 262 2e-70
SB_53825| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 4e-04
SB_25666| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.19
SB_20253| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.1
SB_15605| Best HMM Match : p450 (HMM E-Value=1.4013e-45) 28 5.4
SB_13124| Best HMM Match : Collagen (HMM E-Value=2.3e-11) 28 5.4
SB_24053| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.2
SB_42415| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.5
SB_33019| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.5
>SB_46749| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 190
Score = 262 bits (641), Expect = 2e-70
Identities = 127/156 (81%), Positives = 136/156 (87%)
Frame = +3
Query: 57 VFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKD 236
V SKTY TPRRPFEK RL+QELKIIGEYGLRNKREVWRVK TLA+IRKAARELLTLEEKD
Sbjct: 5 VCSKTYTTPRRPFEKERLNQELKIIGEYGLRNKREVWRVKLTLAKIRKAARELLTLEEKD 64
Query: 237 PKRLFEGNAXXXXXXXXXXXDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHAR 416
P+RLFEGNA DE + KLDYVLGL+IEDFLERRLQTQVFK GLAKSIHHAR
Sbjct: 65 PRRLFEGNALLRRLVRIGVLDESRKKLDYVLGLRIEDFLERRLQTQVFKLGLAKSIHHAR 124
Query: 417 ILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKS 524
+LIRQRHIRVRKQ+VN+PSF+VRLDS KHIDFSL S
Sbjct: 125 VLIRQRHIRVRKQLVNVPSFVVRLDSQKHIDFSLNS 160
>SB_53825| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 182
Score = 41.5 bits (93), Expect = 4e-04
Identities = 27/123 (21%), Positives = 53/123 (43%)
Frame = +3
Query: 114 QELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNAXXXXXXXXXX 293
+E+K++ +Y ++ + + + I+ A ++ L+ KDP R+ E
Sbjct: 28 REVKVLRKYHIQKREDYTKYNKLSGLIKSLANKIKDLDPKDPYRV-EATEQILEKLHNMG 86
Query: 294 XDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPS 473
+ L + F RRL + +A+ + A I Q H+RV +V+ P+
Sbjct: 87 LISTKKNLGQCNKVNASSFCRRRLPVVMVNLKMAQVVKDAVKYIEQGHVRVGPEVIMDPA 146
Query: 474 FIV 482
F+V
Sbjct: 147 FLV 149
>SB_25666| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 128
Score = 32.7 bits (71), Expect = 0.19
Identities = 19/53 (35%), Positives = 26/53 (49%)
Frame = +3
Query: 84 RRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPK 242
+RP K L Q+ +G+YG KR+ V AARE+L +E PK
Sbjct: 57 KRPLGKELLSQQFSDVGKYGRIYKRKFPTVNIVDIADPSAAREVLGIETLGPK 109
>SB_20253| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 55
Score = 28.3 bits (60), Expect = 4.1
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
Frame = -1
Query: 165 TLHACCG---DHTLR*SSTPDQDAPSRTDVEELRMFW 64
TL CCG D T + S+PD PSR ++W
Sbjct: 4 TLETCCGYEYDRTRKSMSSPDFQGPSRAHRTPQEVWW 40
>SB_15605| Best HMM Match : p450 (HMM E-Value=1.4013e-45)
Length = 454
Score = 27.9 bits (59), Expect = 5.4
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = +3
Query: 99 KARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPK 242
K L Q+ +G+YG KR+ V AARE+L +E PK
Sbjct: 2 KELLSQQFSDVGKYGRIYKRKFPTVNIVDIADPSAAREVLGIETLGPK 49
>SB_13124| Best HMM Match : Collagen (HMM E-Value=2.3e-11)
Length = 476
Score = 27.9 bits (59), Expect = 5.4
Identities = 13/49 (26%), Positives = 25/49 (51%)
Frame = -1
Query: 387 QP*TPESEDGAPRSPQSSNRAHNPVSSVSHQALRP*PDDVVEHCLQTIS 241
+P TP ++ + P +SN +HN ++ LR + V HC+ ++
Sbjct: 408 EPGTPGAKGESGGPPFASNASHNELNRTLCHTLRHSGSNTVTHCVTRVT 456
>SB_24053| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2557
Score = 27.5 bits (58), Expect = 7.2
Identities = 31/133 (23%), Positives = 56/133 (42%), Gaps = 11/133 (8%)
Frame = +3
Query: 144 LRNKREVWRVKYTLARIRKAARELLTLE--EKDPKR--LFEGNA----XXXXXXXXXXXD 299
L N E W + AR+R+ +L+ L+ +KD KR + E A D
Sbjct: 1180 LTNTAEAWTQEQREARLRELKDKLVALDPADKDQKRSVMLEAAAIKLVSRKAHLAKSRED 1239
Query: 300 EKQMKLDYVLGLKIEDF-LERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQ--VVNIP 470
++ D V+ I D E+ +++ A + + I +++ HI R Q + N+
Sbjct: 1240 GSEVPRDEVMISLIADLQQEQDKESEGVLASMQEKDKDGLIALQKEHIAARAQDTLANVR 1299
Query: 471 SFIVRLDSGKHID 509
+ + R + G D
Sbjct: 1300 AVLTRGEEGVAAD 1312
>SB_42415| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 806
Score = 27.1 bits (57), Expect = 9.5
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -1
Query: 501 ACRSPGGR*TKECSPPACGHEYAS 430
A +PGGR EC P CG ++ S
Sbjct: 530 AVLNPGGRCPIECQNPGCGIKFCS 553
>SB_33019| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 877
Score = 27.1 bits (57), Expect = 9.5
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -1
Query: 378 TPESEDGAPRSPQSSNRAHNP 316
TPE + G PR+P+ S R +P
Sbjct: 476 TPEMKRGKPRTPEKSRRRKSP 496
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,566,140
Number of Sequences: 59808
Number of extensions: 344340
Number of successful extensions: 887
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 838
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 886
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1184975377
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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