Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_F24
         (525 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g39850.1 68418.m04829 40S ribosomal protein S9 (RPS9C) 40S ri...   228   2e-60
At5g15200.1 68418.m01781 40S ribosomal protein S9 (RPS9B) 40S ri...   227   3e-60
At5g15750.1 68418.m01842 RNA-binding S4 domain-containing protei...    32   0.21 
At4g19870.2 68417.m02913 kelch repeat-containing F-box family pr...    31   0.47 
At4g19870.1 68417.m02912 kelch repeat-containing F-box family pr...    31   0.47 
At1g24490.1 68414.m03084 60 kDa inner membrane family protein si...    29   2.5  
At3g29060.1 68416.m03635 EXS family protein / ERD1/XPR1/SYG1 fam...    28   3.3  
At3g12980.1 68416.m01617 histone acetyltransferase 5 (HAC5) iden...    28   4.4  
At4g15880.1 68417.m02413 Ulp1 protease family protein contains P...    27   7.7  

>At5g39850.1 68418.m04829 40S ribosomal protein S9 (RPS9C) 40S
           ribosomal protein S9 - Chlamydomonas sp.,EMBL:AU066528
          Length = 197

 Score =  228 bits (558), Expect = 2e-60
 Identities = 109/164 (66%), Positives = 132/164 (80%)
 Frame = +3

Query: 33  MVNNRVPSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARE 212
           MVN R    + KT+  PRRP+EK RLD ELK++GEYGLR KRE+WRV+YTL+RIR AARE
Sbjct: 1   MVNVRFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYTLSRIRNAARE 60

Query: 213 LLTLEEKDPKRLFEGNAXXXXXXXXXXXDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGL 392
           LLTL+EK+P+R+FEG A           DE Q KLDYVL L +E+FLERRLQT VFK+G+
Sbjct: 61  LLTLDEKNPRRIFEGEALLRRMNRYGLLDETQNKLDYVLALTVENFLERRLQTIVFKSGM 120

Query: 393 AKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKS 524
           AKSIHHAR+LIRQRHIRV +Q+VNIPSF+VR++S KH+DFSL S
Sbjct: 121 AKSIHHARVLIRQRHIRVGRQLVNIPSFMVRVESQKHVDFSLTS 164


>At5g15200.1 68418.m01781 40S ribosomal protein S9 (RPS9B) 40S
           ribosomal protein S9, Chlamydomonas sp., EMBL:AU066528
          Length = 198

 Score =  227 bits (556), Expect = 3e-60
 Identities = 106/155 (68%), Positives = 128/155 (82%)
 Frame = +3

Query: 60  FSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDP 239
           + KT+  PRRP+EK RLD ELK++GEYGLRNKRE+WRV+Y+L+RIR AAR+LLTL+EK P
Sbjct: 10  YGKTFKGPRRPYEKERLDSELKLVGEYGLRNKRELWRVQYSLSRIRNAARDLLTLDEKSP 69

Query: 240 KRLFEGNAXXXXXXXXXXXDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARI 419
           +R+FEG A           DE Q KLDYVL L +E+FLERRLQT VFK+G+AKSIHH+R+
Sbjct: 70  RRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTIVFKSGMAKSIHHSRV 129

Query: 420 LIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKS 524
           LIRQRHIRV KQ+VNIPSF+VRLDS KHIDF+L S
Sbjct: 130 LIRQRHIRVGKQLVNIPSFMVRLDSQKHIDFALTS 164


>At5g15750.1 68418.m01842 RNA-binding S4 domain-containing protein
           40S RIBOSOMAL PROTEINs - different species
          Length = 182

 Score = 32.3 bits (70), Expect = 0.21
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = +3

Query: 333 LKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 482
           L +  F  RRL T +     A+    A   I Q H+RV  + +  P+F+V
Sbjct: 99  LSVSSFCRRRLSTVLVHLKFAEHHKEAVTYIEQGHVRVGPETITDPAFLV 148


>At4g19870.2 68417.m02913 kelch repeat-containing F-box family
           protein contains F-box domain Pfam:PF00646 and Kelch
           motif Pfam:PF01344
          Length = 400

 Score = 31.1 bits (67), Expect = 0.47
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = -1

Query: 351 RSPQSSNRAHNPVSSVSHQALRP*PDDVVEHCLQTIS*DPSPRVSTV 211
           +  + +  A +P  S S  +L   PD++VE+CL  IS    P +S V
Sbjct: 10  KKTKRTTNASSPTPSSSSPSLSSLPDEIVENCLARISRSYYPTLSIV 56


>At4g19870.1 68417.m02912 kelch repeat-containing F-box family
           protein contains F-box domain Pfam:PF00646 and Kelch
           motif Pfam:PF01344
          Length = 400

 Score = 31.1 bits (67), Expect = 0.47
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = -1

Query: 351 RSPQSSNRAHNPVSSVSHQALRP*PDDVVEHCLQTIS*DPSPRVSTV 211
           +  + +  A +P  S S  +L   PD++VE+CL  IS    P +S V
Sbjct: 10  KKTKRTTNASSPTPSSSSPSLSSLPDEIVENCLARISRSYYPTLSIV 56


>At1g24490.1 68414.m03084 60 kDa inner membrane family protein
           similar to chloroplast membrane protein (ALBINO3)
           (GI:3927828) [Arabidopsis thaliana]
          Length = 1013

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
 Frame = +3

Query: 66  KTYVTPRR-PFEKARLDQ-ELKIIGEYGLRNKREVWRVKYT 182
           K ++ PRR P  +    Q E K   EYG RN  E W +  T
Sbjct: 479 KYFIKPRRHPESECSATQTEYKFTSEYGKRNSSECWAMTTT 519


>At3g29060.1 68416.m03635 EXS family protein / ERD1/XPR1/SYG1 family
           protein similar to PHO1 protein [Arabidopsis thaliana]
           GI:20069032; contains Pfam profiles PF03105: SPX domain,
           PF03124: EXS family
          Length = 794

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -1

Query: 357 APRSPQSSNRAHNPVSSVSH 298
           A RSP+ S++ HNP+SS  H
Sbjct: 93  ASRSPKKSHKHHNPLSSKRH 112


>At3g12980.1 68416.m01617 histone acetyltransferase 5 (HAC5) identical
            to HAC5 (GI:21105780) [Arabidopsis thaliana]; similar to
            CREB-binding protein GB:S39162 from [Homo sapiens]
          Length = 1670

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 14/35 (40%), Positives = 15/35 (42%)
 Frame = +2

Query: 380  QGWSCEVNPSCPHLDQTEAYSCPQAGGEHSFVHRP 484
            QGW CEV   CP  D   A         HS + RP
Sbjct: 1515 QGWRCEV---CPDYDVCNACYSKGINHPHSIISRP 1546


>At4g15880.1 68417.m02413 Ulp1 protease family protein contains Pfam
           profile PF02902: Ulp1 protease family, C-terminal
           catalytic domain; low similarity to
           sentrin/SUMO-specific protease [Homo sapiens]
           GI:6906859;  identical to cDNA hypothetical protein,
           partial (1189 bp) GI:2326349
          Length = 489

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +3

Query: 51  PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREV 164
           P    K    PR PF     D+E ++   +  RN+R+V
Sbjct: 242 PKTVEKRVEVPREPFIPLTEDEEAEVYRAFSGRNRRKV 279


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,298,201
Number of Sequences: 28952
Number of extensions: 228273
Number of successful extensions: 653
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 639
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 653
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 967280384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)