Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_F22
         (549 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1683.07 |mal1||alpha-glucosidase Mal1 |Schizosaccharomyces p...    27   1.4  
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ...    27   2.4  
SPCC70.06 |||nuclear export factor|Schizosaccharomyces pombe|chr...    25   7.3  
SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomy...    25   9.7  
SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ...    25   9.7  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    25   9.7  

>SPBC1683.07 |mal1||alpha-glucosidase Mal1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 579

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 25/77 (32%), Positives = 34/77 (44%), Gaps = 4/77 (5%)
 Frame = +3

Query: 330 MDLVSLETSDENEWVK-ARIIQDKVK---YIWTSGRLCDFKGCNRPDLLPNEVNGWFWTA 497
           MDLV   TSD++EW K +R  +   K   Y W   R  + KG   P   PN    +F T+
Sbjct: 105 MDLVLNHTSDQHEWFKESRSSKTNPKRDWYFWKPARYNE-KGERLP---PNNWRSYFDTS 160

Query: 498 ELQKLAPTNNRQQNDWS 548
             +    T     + WS
Sbjct: 161 AWEWDEATQEYYLHLWS 177


>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1502

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 18/51 (35%), Positives = 26/51 (50%)
 Frame = -2

Query: 359  VAGFQRNEVHATLSTVIPGAEPVFFDPAKCWIPPGEEVAFVVSISLVYCSL 207
            VAG Q+NE+H  L T I      FF  +K  +   +E   VV ++ + C L
Sbjct: 1010 VAGLQQNEIHGKLLT-IRAVLSCFF--SKLTLQQVQEFYEVVPLAFINCFL 1057


>SPCC70.06 |||nuclear export factor|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 458

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +1

Query: 304 PGITVDNVAWTSFLWKPATKMNGLKLASFRTR 399
           P + +D ++W  F++K       LKL S   R
Sbjct: 254 PSVGLDTLSWPDFVFKKPIVKTSLKLYSLAQR 285


>SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 421

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 23/82 (28%), Positives = 37/82 (45%)
 Frame = -2

Query: 491 PEPAIDFVGKQIGTVATLEVTEAS*SPNVLHLVLNDASFNPFIFVAGFQRNEVHATLSTV 312
           P+  +D   K I  VA  + +     P+ L   L++A ++P+     F+R     T   V
Sbjct: 47  PKFVLDAAKKSIDEVACNQYSHTRGRPS-LRKALSEA-YSPY-----FKRTLNPDTEIVV 99

Query: 311 IPGAEPVFFDPAKCWIPPGEEV 246
             GA   FF     ++ PG+EV
Sbjct: 100 TAGANEGFFSVFAAFLNPGDEV 121


>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
           zf-fungal binuclear cluster type |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 977

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 11/39 (28%), Positives = 16/39 (41%)
 Frame = +3

Query: 360 ENEWVKARIIQDKVKYIWTSGRLCDFKGCNRPDLLPNEV 476
           +N W     + DK+  IW         G    D +PNE+
Sbjct: 853 KNYWGSISALCDKMSEIWADWVQRTSSGIQEEDTIPNEM 891


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = -3

Query: 109  FIFSYIRVKFFS*LTKLKSGCWKKITRRVSPVVPLV 2
            F++ +IR  F S   +   G   ++TR++SPV  ++
Sbjct: 1001 FVYDFIRATFTSLNDEYMIGEDPELTRKISPVEGII 1036


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,373,054
Number of Sequences: 5004
Number of extensions: 48840
Number of successful extensions: 122
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)