Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_F22
(549 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0259 - 1996427-1998772 31 0.61
06_01_0989 + 7672764-7672904,7673017-7673067,7673176-7673296,767... 31 0.80
02_05_0684 - 30880527-30880753,30881952-30882124,30882687-308827... 29 3.2
09_02_0499 - 9917891-9918148,9918240-9918494,9918769-9918940,991... 28 4.3
04_04_0476 - 25508952-25509004,25509245-25509326,25509453-255096... 28 5.6
04_04_1410 + 33363784-33364086,33364221-33364280,33364388-333644... 27 7.5
02_05_1139 - 34381575-34381878,34382181-34382865,34383479-34383881 27 7.5
02_04_0488 + 23397480-23397687,23397777-23397805,23398462-233985... 27 7.5
02_04_0485 + 23338980-23339187,23339277-23339305,23339962-233400... 27 7.5
02_04_0482 + 23291986-23292181,23292289-23292317,23293500-232936... 27 7.5
01_05_0596 + 23511148-23512650 27 9.9
>03_01_0259 - 1996427-1998772
Length = 781
Score = 31.1 bits (67), Expect = 0.61
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +1
Query: 151 KLSSPTVVSWNHRYHRYAYREQYT 222
K+++ T+VSWN+ Y Y+E YT
Sbjct: 370 KIANKTLVSWNNMIAAYMYKEMYT 393
>06_01_0989 +
7672764-7672904,7673017-7673067,7673176-7673296,
7673406-7673510,7673963-7674024,7674398-7674515,
7674596-7674932,7675389-7675536,7675632-7675733,
7675824-7675943,7676436-7676519,7676622-7676749,
7677351-7677435,7677566-7677713,7677971-7678047,
7678187-7678243,7678423-7678561,7678642-7678796,
7679003-7679116,7679208-7679275,7679830-7679996,
7680245-7680453
Length = 911
Score = 30.7 bits (66), Expect = 0.80
Identities = 18/53 (33%), Positives = 27/53 (50%)
Frame = -1
Query: 273 VLDPARRRSSLCCQHISRVLFSVRIAMVPVVPGYDRWGTELAPPPQMQLIPIS 115
VLD A+ S LC + + RVL + A PG R+ PP + ++I I+
Sbjct: 421 VLDMAKEPSRLCVEEVHRVLLDIVNASANATPGLGRY-----PPFKREVIAIA 468
>02_05_0684 -
30880527-30880753,30881952-30882124,30882687-30882754,
30882860-30882973,30883281-30883438,30883516-30883654,
30883851-30883907,30884064-30884140,30884324-30884462,
30884590-30884668,30885047-30885174,30885269-30885352,
30886072-30886191,30886274-30886375,30886470-30886617,
30887404-30887749,30887851-30887968,30888309-30888370,
30888798-30888947,30889049-30889169,30889269-30889319,
30889427-30889567
Length = 933
Score = 28.7 bits (61), Expect = 3.2
Identities = 16/53 (30%), Positives = 27/53 (50%)
Frame = -1
Query: 273 VLDPARRRSSLCCQHISRVLFSVRIAMVPVVPGYDRWGTELAPPPQMQLIPIS 115
VL+ A+ S LC + + RVL + A PG R+ PP + +++ I+
Sbjct: 439 VLEMAKEPSRLCVEEVHRVLLDIVNASANATPGLGRY-----PPFKREVVEIA 486
>09_02_0499 -
9917891-9918148,9918240-9918494,9918769-9918940,
9919056-9919283,9919628-9919761,9919842-9919925,
9920007-9920297,9920569-9920901,9921029-9921171,
9921266-9921379,9921470-9921626,9921709-9921812,
9921914-9922074,9922158-9922474,9922574-9922855,
9923205-9923506,9923603-9923693,9923864-9923917,
9924052-9924128,9924213-9924372,9924473-9924557,
9924635-9924723,9925791-9925925
Length = 1341
Score = 28.3 bits (60), Expect = 4.3
Identities = 13/28 (46%), Positives = 20/28 (71%)
Frame = -2
Query: 407 VLHLVLNDASFNPFIFVAGFQRNEVHAT 324
+L LV+N+ S F F+AGF R++V A+
Sbjct: 537 LLLLVMNETSSGLFRFIAGFARHQVVAS 564
>04_04_0476 -
25508952-25509004,25509245-25509326,25509453-25509611,
25509702-25509767,25509898-25510067,25510172-25510262,
25510331-25510410,25510887-25511003,25511092-25511218,
25511685-25511865,25511978-25512366,25512959-25513135,
25513306-25513500,25513844-25514031,25514192-25514500,
25514592-25514637
Length = 809
Score = 27.9 bits (59), Expect = 5.6
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = -1
Query: 273 VLDPARRRSSLCCQHISRVLFSVRIAMVPVVPG 175
+L P R + C H+ +RI +VP+V G
Sbjct: 236 ILTPTRELAKQVCDHLKEAAKFLRIQVVPIVGG 268
>04_04_1410 +
33363784-33364086,33364221-33364280,33364388-33364464,
33365032-33365089,33365179-33365262,33365358-33365394,
33365855-33365924,33366655-33366849,33366947-33367039,
33367187-33367418,33367515-33367598,33368205-33368301,
33368510-33368577,33368662-33368739,33368823-33368945,
33369059-33369172,33369288-33369368
Length = 617
Score = 27.5 bits (58), Expect = 7.5
Identities = 13/23 (56%), Positives = 13/23 (56%)
Frame = +3
Query: 168 GRILEPPVPSLCVQRTIHERYAD 236
G L PP PS C RT RYAD
Sbjct: 374 GGSLAPPFPSPCTLRTALLRYAD 396
>02_05_1139 - 34381575-34381878,34382181-34382865,34383479-34383881
Length = 463
Score = 27.5 bits (58), Expect = 7.5
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Frame = +1
Query: 91 GCMKK*SQRYWY*LHLRWWR---KLSSPTVVSWNHRYHRYAYR 210
GC ++ W H R++R K+S PT SW+ YA+R
Sbjct: 259 GCPNYPMKKEWLNYHQRYYRLMSKVSPPTSGSWHKGCVMYAHR 301
>02_04_0488 +
23397480-23397687,23397777-23397805,23398462-23398564,
23398811-23398982,23399380-23399440,23399757-23399889,
23400438-23400709,23400776-23400843,23401096-23401235,
23401413-23401499,23401580-23402088,23402173-23402990,
23403024-23403222,23403662-23403817
Length = 984
Score = 27.5 bits (58), Expect = 7.5
Identities = 10/19 (52%), Positives = 16/19 (84%), Gaps = 1/19 (5%)
Frame = +1
Query: 145 WRKLS-SPTVVSWNHRYHR 198
WR++S S T+++W+HRY R
Sbjct: 729 WREVSESGTLLNWSHRYER 747
>02_04_0485 +
23338980-23339187,23339277-23339305,23339962-23340064,
23340311-23340482,23340880-23340940,23341257-23341389,
23341938-23342208,23342595-23342734,23342912-23342998,
23343078-23343586,23343671-23344488,23344522-23344720,
23345552-23345696,23345728-23345782,23347652-23347778,
23347867-23347936,23348448-23348553,23348636-23348747,
23349243-23349365,23349468-23349627,23349751-23349827,
23349925-23349977,23350151-23350205,23350500-23351174
Length = 1495
Score = 27.5 bits (58), Expect = 7.5
Identities = 10/19 (52%), Positives = 16/19 (84%), Gaps = 1/19 (5%)
Frame = +1
Query: 145 WRKLS-SPTVVSWNHRYHR 198
WR++S S T+++W+HRY R
Sbjct: 706 WREVSESGTLLNWSHRYER 724
>02_04_0482 +
23291986-23292181,23292289-23292317,23293500-23293602,
23293855-23293979,23294788-23294920,23295468-23295739,
23295806-23295873,23296126-23296265,23296443-23296529,
23296610-23297118,23297203-23298020,23298054-23298252,
23299084-23299228,23299260-23299314,23301184-23301310,
23301399-23301468,23301980-23302085,23302168-23302279,
23302775-23302897,23303000-23303159,23303283-23303359,
23303457-23303509,23303683-23303737,23304032-23304706
Length = 1478
Score = 27.5 bits (58), Expect = 7.5
Identities = 10/19 (52%), Positives = 16/19 (84%), Gaps = 1/19 (5%)
Frame = +1
Query: 145 WRKLS-SPTVVSWNHRYHR 198
WR++S S T+++W+HRY R
Sbjct: 689 WREVSESGTLLNWSHRYER 707
>01_05_0596 + 23511148-23512650
Length = 500
Score = 27.1 bits (57), Expect = 9.9
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = -1
Query: 216 LFSVRIAMVPVVPGYDRWGTELAPPPQMQLIPISLTSFF 100
L +++ VP V + G E A PP+ LIP+ F
Sbjct: 422 LSGLKVVKVPTVSMHFAGGAEAALPPENYLIPVDSRGTF 460
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,005,138
Number of Sequences: 37544
Number of extensions: 336501
Number of successful extensions: 992
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 962
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 992
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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