Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_F22
         (549 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55359| Best HMM Match : No HMM Matches (HMM E-Value=.)              39   0.002
SB_38168| Best HMM Match : Lectin_C (HMM E-Value=7.9e-06)              34   0.067
SB_56031| Best HMM Match : Lectin_C (HMM E-Value=3.3e-08)              33   0.15 
SB_49294| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.15 
SB_24471| Best HMM Match : Lectin_C (HMM E-Value=2.7e-12)              33   0.20 
SB_4966| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.62 
SB_58330| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.82 
SB_222| Best HMM Match : No HMM Matches (HMM E-Value=.)                29   1.9  
SB_16280| Best HMM Match : PA14 (HMM E-Value=0.00074)                  29   2.5  
SB_5862| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.3  
SB_18120| Best HMM Match : Colipase_C (HMM E-Value=0.87)               27   7.6  
SB_33276| Best HMM Match : Glyco_transf_43 (HMM E-Value=0)             27   7.6  
SB_13654| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.6  

>SB_55359| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2516

 Score = 39.1 bits (87), Expect = 0.002
 Identities = 29/86 (33%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
 Frame = +3

Query: 294  WLSARNYCRQRCMDLVSLETSDENEWVKARIIQDKVK-YIWTSGRLCDFKGCNRPDLLPN 470
            W+ AR++CR+   DLVSL T++EN +V + I   K + Y WT      + G N  DL   
Sbjct: 1465 WMEARDFCRKSRGDLVSLRTANENAFVFSEI---KTRYYYWTV-----WIGLN--DLGTE 1514

Query: 471  EVNGWFWTAELQKLAPTNNRQQNDWS 548
             VN W   + +  +    N++ N+W+
Sbjct: 1515 GVNTWSDGSPMSYI-NWGNKEPNNWN 1539


>SB_38168| Best HMM Match : Lectin_C (HMM E-Value=7.9e-06)
          Length = 583

 Score = 34.3 bits (75), Expect = 0.067
 Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = +3

Query: 204 VQRTIHERYADNKG-YFFSWRDPALRGVEEDWLSARNYCRQRCMDLVSLETSDENEWVK 377
           V  T + RY   +G Y+++ +       EE W   + YC  +  DL  +   +ENE+++
Sbjct: 84  VTATTYLRYKCKQGWYYYNGKCYHYSSFEETWTQGQRYCLDQDADLAIINDREENEFIR 142


>SB_56031| Best HMM Match : Lectin_C (HMM E-Value=3.3e-08)
          Length = 129

 Score = 33.1 bits (72), Expect = 0.15
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = +3

Query: 234 DNKGYFFSWRDPALRGVEEDWLSARNYCRQRCMDLVSLETSDENEWVKA 380
           D+  ++F  +   L  VEE W +A   CR R   LV +    ENE++++
Sbjct: 3   DSSWHYFDGKCYFLSTVEEPWTAAERSCRVRGSTLVIVNNLMENEFIRS 51


>SB_49294| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 186

 Score = 33.1 bits (72), Expect = 0.15
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = +3

Query: 234 DNKGYFFSWRDPALRGVEEDWLSARNYCRQRCMDLVSLETSDENEWVKA 380
           D+  ++F  +   L  VEE W +A   CR R   LV +    ENE++++
Sbjct: 60  DSSWHYFDGKCYFLSTVEEPWTAAERSCRVRGSTLVIVNNLMENEFIRS 108


>SB_24471| Best HMM Match : Lectin_C (HMM E-Value=2.7e-12)
          Length = 695

 Score = 32.7 bits (71), Expect = 0.20
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +3

Query: 294 WLSARNYCRQRCMDLVSLETSDENEWVKARIIQDKVKYIW 413
           W SA   C ++   LV++E S E   VK+ + ++K  Y W
Sbjct: 167 WESAVQRCTEQFASLVTIENSIEEAMVKSMLTENKRNYTW 206


>SB_4966| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1044

 Score = 31.1 bits (67), Expect = 0.62
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +3

Query: 288 EDWLSARNYCRQRCMDLVSLETSDENEWVKARI 386
           E W   R  C+ +  DLVS+ET  E  +VK+ +
Sbjct: 869 ESWAEGRKTCQSKGGDLVSIETDGEWSYVKSLV 901


>SB_58330| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 631

 Score = 30.7 bits (66), Expect = 0.82
 Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 6/55 (10%)
 Frame = +3

Query: 240 KGYFFSWRDPALRGV--EEDWLS---ARNYCRQR-CMDLVSLETSDENEWVKARI 386
           +G+ F   D + + V   +DW +   A   C+Q     LVS+ET DEN W+  RI
Sbjct: 122 RGFVFERGDFSYKIVLARDDWRTFYEAEQICQQEEDGHLVSIETRDENNWINDRI 176


>SB_222| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2323

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +3

Query: 294 WLSARNYCRQRCMDLVSLETSDENEWVKARI 386
           W   R  C+ R  DLVS+ET +E  ++  +I
Sbjct: 370 WTENREKCKSRNGDLVSMETEEEWSFINKKI 400


>SB_16280| Best HMM Match : PA14 (HMM E-Value=0.00074)
          Length = 643

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
 Frame = +3

Query: 222 ERYADNK-GYFFSWRDPALRGV---EEDWLSARNYCRQRCMDLVSLETSDENEWVKARI 386
           ER+ + + G+   W D  +        +W + R YC     DLVS+ET  + ++++  I
Sbjct: 5   ERHEEERHGHAVRWHDGKIYAFIANGSEWKANRKYCLAHNGDLVSIETEKKWQFIRDEI 63


>SB_5862| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2353

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 18/70 (25%), Positives = 29/70 (41%)
 Frame = +1

Query: 244  ATSSPGGIQHFAGSKKTGSAPGITVDNVAWTSFLWKPATKMNGLKLASFRTR*STFGLQD 423
            ++S+P   +    +    +AP  TV   +     W P ++MNG+ L    TR S      
Sbjct: 1426 SSSTPASARTLEAAPGIMAAPVATVGGASLVRVQWSPPSEMNGVLLYYLLTRDSVIIYNG 1485

Query: 424  ASVTSRVATV 453
              +T    TV
Sbjct: 1486 TDLTFNDYTV 1495


>SB_18120| Best HMM Match : Colipase_C (HMM E-Value=0.87)
          Length = 363

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +3

Query: 255 SWRDPALRGVEEDWLSARNYCRQRCMDLVSLETSDENEWVKAR 383
           S +  +L G  ED+   R Y   +C+ + S+ T+ E E VK R
Sbjct: 191 SCKSSSLDGAREDFPCLRTYLENKCV-IGSMTTNSEFEVVKQR 232


>SB_33276| Best HMM Match : Glyco_transf_43 (HMM E-Value=0)
          Length = 1182

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 17/58 (29%), Positives = 27/58 (46%)
 Frame = +3

Query: 201 CVQRTIHERYADNKGYFFSWRDPALRGVEEDWLSARNYCRQRCMDLVSLETSDENEWV 374
           C+  +I  R  ++  Y+   R+ A       W  AR  C     DLV + + +ENE+V
Sbjct: 113 CIYASIRPRKVNDSCYWADTREMA-------WNDARAACGDMGGDLVQIASKEENEFV 163


>SB_13654| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1451

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = +3

Query: 438 KGCNRPDLLPNEVN 479
           KGC++P  LPNE+N
Sbjct: 291 KGCDKPGRLPNEIN 304


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,210,698
Number of Sequences: 59808
Number of extensions: 383208
Number of successful extensions: 958
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 891
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 957
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1264269032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)