Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_F22
         (549 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g58960.1 68416.m06570 F-box family protein contains F-box dom...    31   0.67 
At2g03240.1 68415.m00277 EXS family protein / ERD1/XPR1/SYG1 fam...    29   2.0  
At1g17270.1 68414.m02103 expressed protein                             29   2.0  
At2g03260.1 68415.m00279 EXS family protein / ERD1/XPR1/SYG1 fam...    28   3.6  
At2g16920.1 68415.m01949 ubiquitin-conjugating enzyme family pro...    27   6.2  

>At3g58960.1 68416.m06570 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 475

 Score = 30.7 bits (66), Expect = 0.67
 Identities = 12/23 (52%), Positives = 18/23 (78%), Gaps = 2/23 (8%)
 Frame = +1

Query: 133 HLRWWRKLSSPTV--VSWNHRYH 195
           H +W R++SSPT+  ++ NHRYH
Sbjct: 193 HWQWSRRVSSPTLEKLTMNHRYH 215


>At2g03240.1 68415.m00277 EXS family protein / ERD1/XPR1/SYG1 family
           protein similar to  PHO1 protein [Arabidopsis thaliana]
           GI:20069032; contains Pfam profiles PF03105: SPX domain,
           PF03124: EXS family
          Length = 823

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 11/46 (23%), Positives = 24/46 (52%)
 Frame = +1

Query: 136 LRWWRKLSSPTVVSWNHRYHRYAYREQYTRDMLTTKATSSPGGIQH 273
           +++ ++ SS  V  W+  Y  Y Y +   ++++  K  ++P G  H
Sbjct: 1   MKFGKEFSSQMVPEWHEAYMDYDYLKSQLKEIIKFKRKTNPHGPHH 46


>At1g17270.1 68414.m02103 expressed protein
          Length = 564

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
 Frame = +3

Query: 228 YADNKGYFFSWR-DPALRGVEEDWLSARNYCRQRCMDLVSL---ETSDENEWVKARIIQD 395
           + D + +F S++ DP    V+E  L A N  RQ+ + LVSL      + +  + + ++ D
Sbjct: 87  FTDTRTFFSSFKLDPMSSRVKESELQALNLLRQQQLALVSLLNRTNFNSSNAISSSVVID 146

Query: 396 KVK 404
            VK
Sbjct: 147 NVK 149


>At2g03260.1 68415.m00279 EXS family protein / ERD1/XPR1/SYG1 family
           protein similar to PHO1 protein [Arabidopsis thaliana]
           GI:20069032; contains Pfam profiles PF03105: SPX domain,
           PF03124: EXS family
          Length = 807

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 12/48 (25%), Positives = 24/48 (50%)
 Frame = +1

Query: 136 LRWWRKLSSPTVVSWNHRYHRYAYREQYTRDMLTTKATSSPGGIQHFA 279
           +++ ++LSS  V  W   Y  Y Y +   ++++  K  ++P    H A
Sbjct: 1   MKFGKELSSQMVQEWQQAYVNYDYLKTLLKEIIKLKEKTNPPPPPHHA 48


>At2g16920.1 68415.m01949 ubiquitin-conjugating enzyme family
           protein low similarity to ubiquitin-conjugating
           BIR-domain enzyme APOLLON [Homo sapiens] GI:8489831,
           ubiquitin-conjugating enzyme [Mus musculus] GI:3319990;
           contains Pfam profile PF00179: Ubiquitin-conjugating
           enzyme
          Length = 1102

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 10/39 (25%), Positives = 21/39 (53%)
 Frame = +3

Query: 282 VEEDWLSARNYCRQRCMDLVSLETSDENEWVKARIIQDK 398
           V+  W      CR+  + L+ +ET  ++E+V  + + +K
Sbjct: 458 VDVSWQDGTIECRREAITLIPIETPGDHEFVSEQYVVEK 496


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,645,323
Number of Sequences: 28952
Number of extensions: 263356
Number of successful extensions: 762
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 747
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 762
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1033331880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)