Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_F21
         (545 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58517| Best HMM Match : Ribosomal_L30_N (HMM E-Value=1.5e-32)      190   5e-49
SB_13893| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_19021| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.3  
SB_56940| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.3  
SB_37670| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_8804| Best HMM Match : RGS (HMM E-Value=1.5e-37)                    28   5.7  
SB_3843| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.6  

>SB_58517| Best HMM Match : Ribosomal_L30_N (HMM E-Value=1.5e-32)
          Length = 245

 Score =  190 bits (464), Expect = 5e-49
 Identities = 92/147 (62%), Positives = 110/147 (74%)
 Frame = +2

Query: 104 EDSKKLPAVPESVXXXXXXXXXXXXXXXQITLKRRSASIKKRKEIFKRAEQYVKEYRIKE 283
           +D  K+P VPE++               +  L ++     KRKEIFKRAE+YVKEYR KE
Sbjct: 3   QDRVKVPRVPETLLKKRKSLEQIKAARAKAQLAQKKLQHGKRKEIFKRAEKYVKEYRQKE 62

Query: 284 RDEIRLARQARNRGNYYVPGEAKLAFVIRIRGVNQVSPKVRKVLQLFRLRQINNGVFVRL 463
            DE+R+ + A+  GN+YVP EA+LAFVIRIRG+N VSPKVRK+LQL RLRQINNGVFVRL
Sbjct: 63  VDELRMKKMAKKHGNFYVPPEARLAFVIRIRGINGVSPKVRKILQLLRLRQINNGVFVRL 122

Query: 464 NKATVNMLRIAEPYIAWGYPNLKSVRE 544
           NKAT NMLRI +PYIA+GYPNLKSVRE
Sbjct: 123 NKATANMLRIVQPYIAFGYPNLKSVRE 149


>SB_13893| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 77

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +2

Query: 206 RSASIKKRKEIFKRAEQYVKEYRIKERDEIRLARQARNRGNY 331
           R   + +R+EI++R E Y +    + R+  RL    R R  Y
Sbjct: 27  RRREMYRRREIYRRREMYRRREMYRRREMYRLREMYRRREMY 68


>SB_19021| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 590

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +3

Query: 360 LSSVFVVSTKYHPRYARYCSCSGCVRS 440
           L S+FV +T    RY  YC+C G + S
Sbjct: 286 LGSIFVWATGNGGRYNDYCNCDGYITS 312


>SB_56940| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1981

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +2

Query: 296  RLARQARNRGNYYVPGEAKLAFVIRIRGVNQVSPKVRK 409
            RL R  + R NYY+  +  +AF + I  V +  P  R+
Sbjct: 1886 RLRRTEKRRQNYYIATQKLMAFALNIYEVLKDDPLTRR 1923


>SB_37670| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1039

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 9/36 (25%), Positives = 22/36 (61%)
 Frame = +2

Query: 209 SASIKKRKEIFKRAEQYVKEYRIKERDEIRLARQAR 316
           S   +KRK +FK  ++  K+ ++++ D  +++ Q +
Sbjct: 802 STETRKRKHVFKSGDRTAKKRKLEDNDHEKISTQVK 837


>SB_8804| Best HMM Match : RGS (HMM E-Value=1.5e-37)
          Length = 712

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +2

Query: 278 KERDEIRLARQARNRGNYYVP 340
           K RD   +AR+ R+RG YY+P
Sbjct: 483 KIRDTSSIARETRSRGPYYLP 503


>SB_3843| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 72

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = +2

Query: 206 RSASIKKRKEIFKRAEQYVKEYRIKERDEIRLARQARNRGNY 331
           R  +I +R+E+++R E Y +    + R+  R     R R  Y
Sbjct: 16  RRRAINRRREMYRRREMYRRREMYRRREMYRRREMYRRREMY 57


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,221,980
Number of Sequences: 59808
Number of extensions: 340643
Number of successful extensions: 951
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 901
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 950
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1252112599
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)