Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_F21
(545 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g44120.2 68415.m05488 60S ribosomal protein L7 (RPL7C) 156 8e-39
At2g44120.1 68415.m05487 60S ribosomal protein L7 (RPL7C) 156 8e-39
At3g13580.3 68416.m01710 60S ribosomal protein L7 (RPL7D) simila... 154 4e-38
At3g13580.2 68416.m01709 60S ribosomal protein L7 (RPL7D) simila... 154 4e-38
At3g13580.1 68416.m01708 60S ribosomal protein L7 (RPL7D) simila... 154 4e-38
At2g01250.1 68415.m00037 60S ribosomal protein L7 (RPL7B) 150 7e-37
At1g80750.1 68414.m09474 60S ribosomal protein L7 (RPL7A) simila... 86 2e-17
At1g31820.1 68414.m03908 amino acid permease family protein weak... 31 0.66
At1g26540.1 68414.m03234 agenet domain-containing protein contai... 29 1.5
At3g52860.1 68416.m05825 expressed protein 29 2.0
At5g45310.1 68418.m05562 expressed protein 28 3.5
At3g54690.1 68416.m06051 sugar isomerase (SIS) domain-containing... 28 4.7
At5g37420.1 68418.m04502 hypothetical protein contains Pfam PF04... 27 6.2
At3g26780.1 68416.m03350 phosphoglycerate/bisphosphoglycerate mu... 27 6.2
At3g09120.1 68416.m01073 hypothetical protein contains Pfam prof... 27 8.2
At2g18540.1 68415.m02160 cupin family protein contains Pfam prof... 27 8.2
>At2g44120.2 68415.m05488 60S ribosomal protein L7 (RPL7C)
Length = 247
Score = 156 bits (379), Expect = 8e-39
Identities = 75/139 (53%), Positives = 96/139 (69%)
Frame = +2
Query: 128 VPESVXXXXXXXXXXXXXXXQITLKRRSASIKKRKEIFKRAEQYVKEYRIKERDEIRLAR 307
VPESV + + S++ RK IFKRAEQY KEY K+ + IRL R
Sbjct: 13 VPESVLKKIKRQEEWALAKKDEAVAAKKKSVEARKLIFKRAEQYAKEYAEKDNELIRLKR 72
Query: 308 QARNRGNYYVPGEAKLAFVIRIRGVNQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNML 487
+A+ +G +YV EAKL F+IRIRG+N + PK +K+LQL RLRQI NGVF+++NKATVNML
Sbjct: 73 EAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATVNML 132
Query: 488 RIAEPYIAWGYPNLKSVRE 544
R EPY+ +GYPNLKSV+E
Sbjct: 133 RRVEPYVTYGYPNLKSVKE 151
>At2g44120.1 68415.m05487 60S ribosomal protein L7 (RPL7C)
Length = 242
Score = 156 bits (379), Expect = 8e-39
Identities = 75/139 (53%), Positives = 96/139 (69%)
Frame = +2
Query: 128 VPESVXXXXXXXXXXXXXXXQITLKRRSASIKKRKEIFKRAEQYVKEYRIKERDEIRLAR 307
VPESV + + S++ RK IFKRAEQY KEY K+ + IRL R
Sbjct: 8 VPESVLKKIKRQEEWALAKKDEAVAAKKKSVEARKLIFKRAEQYAKEYAEKDNELIRLKR 67
Query: 308 QARNRGNYYVPGEAKLAFVIRIRGVNQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNML 487
+A+ +G +YV EAKL F+IRIRG+N + PK +K+LQL RLRQI NGVF+++NKATVNML
Sbjct: 68 EAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATVNML 127
Query: 488 RIAEPYIAWGYPNLKSVRE 544
R EPY+ +GYPNLKSV+E
Sbjct: 128 RRVEPYVTYGYPNLKSVKE 146
>At3g13580.3 68416.m01710 60S ribosomal protein L7 (RPL7D) similar
to 60S ribosomal protein L7 GB:AAD14525 GI:4262232 from
[Arabidopsis thaliana]
Length = 244
Score = 154 bits (373), Expect = 4e-38
Identities = 74/146 (50%), Positives = 100/146 (68%)
Frame = +2
Query: 107 DSKKLPAVPESVXXXXXXXXXXXXXXXQITLKRRSASIKKRKEIFKRAEQYVKEYRIKER 286
+++ VPESV Q + + +KRK IF RA+QY KEY+ KER
Sbjct: 3 EAESKTVVPESVLKKRKREEEWALAKKQELEAAKKQNAEKRKLIFNRAKQYSKEYQEKER 62
Query: 287 DEIRLARQARNRGNYYVPGEAKLAFVIRIRGVNQVSPKVRKVLQLFRLRQINNGVFVRLN 466
+ I+L R+A+ +G +YV EAKL F+IRIRG+N + PK +K+LQL RLRQI NGVF+++N
Sbjct: 63 ELIQLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVN 122
Query: 467 KATVNMLRIAEPYIAWGYPNLKSVRE 544
KAT+NMLR EPY+ +GYPNLKSV+E
Sbjct: 123 KATINMLRRVEPYVTYGYPNLKSVKE 148
>At3g13580.2 68416.m01709 60S ribosomal protein L7 (RPL7D) similar
to 60S ribosomal protein L7 GB:AAD14525 GI:4262232 from
[Arabidopsis thaliana]
Length = 244
Score = 154 bits (373), Expect = 4e-38
Identities = 74/146 (50%), Positives = 100/146 (68%)
Frame = +2
Query: 107 DSKKLPAVPESVXXXXXXXXXXXXXXXQITLKRRSASIKKRKEIFKRAEQYVKEYRIKER 286
+++ VPESV Q + + +KRK IF RA+QY KEY+ KER
Sbjct: 3 EAESKTVVPESVLKKRKREEEWALAKKQELEAAKKQNAEKRKLIFNRAKQYSKEYQEKER 62
Query: 287 DEIRLARQARNRGNYYVPGEAKLAFVIRIRGVNQVSPKVRKVLQLFRLRQINNGVFVRLN 466
+ I+L R+A+ +G +YV EAKL F+IRIRG+N + PK +K+LQL RLRQI NGVF+++N
Sbjct: 63 ELIQLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVN 122
Query: 467 KATVNMLRIAEPYIAWGYPNLKSVRE 544
KAT+NMLR EPY+ +GYPNLKSV+E
Sbjct: 123 KATINMLRRVEPYVTYGYPNLKSVKE 148
>At3g13580.1 68416.m01708 60S ribosomal protein L7 (RPL7D) similar
to 60S ribosomal protein L7 GB:AAD14525 GI:4262232 from
[Arabidopsis thaliana]
Length = 244
Score = 154 bits (373), Expect = 4e-38
Identities = 74/146 (50%), Positives = 100/146 (68%)
Frame = +2
Query: 107 DSKKLPAVPESVXXXXXXXXXXXXXXXQITLKRRSASIKKRKEIFKRAEQYVKEYRIKER 286
+++ VPESV Q + + +KRK IF RA+QY KEY+ KER
Sbjct: 3 EAESKTVVPESVLKKRKREEEWALAKKQELEAAKKQNAEKRKLIFNRAKQYSKEYQEKER 62
Query: 287 DEIRLARQARNRGNYYVPGEAKLAFVIRIRGVNQVSPKVRKVLQLFRLRQINNGVFVRLN 466
+ I+L R+A+ +G +YV EAKL F+IRIRG+N + PK +K+LQL RLRQI NGVF+++N
Sbjct: 63 ELIQLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVN 122
Query: 467 KATVNMLRIAEPYIAWGYPNLKSVRE 544
KAT+NMLR EPY+ +GYPNLKSV+E
Sbjct: 123 KATINMLRRVEPYVTYGYPNLKSVKE 148
>At2g01250.1 68415.m00037 60S ribosomal protein L7 (RPL7B)
Length = 242
Score = 150 bits (363), Expect = 7e-37
Identities = 73/139 (52%), Positives = 95/139 (68%)
Frame = +2
Query: 128 VPESVXXXXXXXXXXXXXXXQITLKRRSASIKKRKEIFKRAEQYVKEYRIKERDEIRLAR 307
VPESV Q + + + RK IFKRAEQY KEY KE++ I L R
Sbjct: 8 VPESVLKKRKREEEWALEKKQNVEAAKKKNAENRKLIFKRAEQYSKEYAEKEKELISLKR 67
Query: 308 QARNRGNYYVPGEAKLAFVIRIRGVNQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNML 487
+A+ +G +YV EAKL F+IRIRG+N + PK +K+LQL RLRQI NGVF+++NKAT+NML
Sbjct: 68 EAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATMNML 127
Query: 488 RIAEPYIAWGYPNLKSVRE 544
R EPY+ +G+PNLKSV+E
Sbjct: 128 RRVEPYVTYGFPNLKSVKE 146
>At1g80750.1 68414.m09474 60S ribosomal protein L7 (RPL7A) similar
to ribosomal protein L7 GB:AAA03081 GI:307388 from [Homo
sapiens]
Length = 247
Score = 85.8 bits (203), Expect = 2e-17
Identities = 45/148 (30%), Positives = 76/148 (51%)
Frame = +2
Query: 101 KEDSKKLPAVPESVXXXXXXXXXXXXXXXQITLKRRSASIKKRKEIFKRAEQYVKEYRIK 280
+E++K L +PE V + S KK+ KR E +V E+R K
Sbjct: 3 EEEAKGLDYIPEIVLKKRKNRDELAFIRKKQLELGNSGKKKKKVSDIKRPEDFVHEFRAK 62
Query: 281 ERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGVNQVSPKVRKVLQLFRLRQINNGVFVR 460
E D IR+ ++ + + P ++ L F+IRI+G N + PK +++L +L+ + GVF +
Sbjct: 63 EVDMIRMKQRVKRPKSSPPPVKSDLVFIIRIQGKNDMHPKTKRILNNLQLKSVFTGVFAK 122
Query: 461 LNKATVNMLRIAEPYIAWGYPNLKSVRE 544
+ L +PY+ +GYPN KSV++
Sbjct: 123 ATDSLFQKLLKVQPYVTYGYPNDKSVKD 150
>At1g31820.1 68414.m03908 amino acid permease family protein weak
similarity to asc-type amino acid transporter 2 [Mus
musculus] GI:18148438; contains Pfam profile PF00324:
Amino acid permease
Length = 482
Score = 30.7 bits (66), Expect = 0.66
Identities = 15/36 (41%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Frame = -2
Query: 286 TLLDAVFFDILFGSLKDFFPLLNGSGT-PLECDLKT 182
TL A+ + ++F +L +F PLL+G+G PL+ +L T
Sbjct: 245 TLPKALCYGVIFVALSNFLPLLSGTGAIPLDRELWT 280
>At1g26540.1 68414.m03234 agenet domain-containing protein contains
Pfam PF05641: Agenet domain
Length = 695
Score = 29.5 bits (63), Expect = 1.5
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -3
Query: 396 GDTWLTPRIRMTNASLASPGT 334
G TW+ P I +N S+ SPGT
Sbjct: 138 GGTWIQPEIEESNKSMFSPGT 158
>At3g52860.1 68416.m05825 expressed protein
Length = 156
Score = 29.1 bits (62), Expect = 2.0
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +2
Query: 197 LKRRSASIKKRKEIFKRAEQYVKEYRIKERDEI 295
LK + IKK +F+ +++ VKE K RDE+
Sbjct: 121 LKTKDELIKKHMRLFQESQKLVKEQIEKHRDEL 153
>At5g45310.1 68418.m05562 expressed protein
Length = 352
Score = 28.3 bits (60), Expect = 3.5
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +2
Query: 227 RKEIFKRAEQYVKEYRIKERD 289
RKEI K + +KEYRI E+D
Sbjct: 107 RKEIEKNLREAIKEYRIMEQD 127
>At3g54690.1 68416.m06051 sugar isomerase (SIS) domain-containing
protein / CBS domain-containing protein similar to
SP|Q47334 Polysialic acid capsule expression protein
kpsF {Escherichia coli}; contains Pfam profiles PF01380:
sugar isomerase (SIS) domain, PF00571: CBS domain
Length = 350
Score = 27.9 bits (59), Expect = 4.7
Identities = 17/51 (33%), Positives = 27/51 (52%)
Frame = -2
Query: 349 SFTGHIIIATVTSLSCQSDFITLLDAVFFDILFGSLKDFFPLLNGSGTPLE 197
+F + + T+ SLS +S F++ LDA+ DI S +D + SG E
Sbjct: 80 AFVANKVSQTLVSLSFRSSFLSPLDALHGDIGALSPRDVLVFFSKSGATEE 130
>At5g37420.1 68418.m04502 hypothetical protein contains Pfam PF04510
: Family of unknown function (DUF577)); common family
comprised of At5g37410, At5g37400, At5g37920,
At5g37460, At5g37650, At5g37470, At5g37420, At5g37430
Length = 579
Score = 27.5 bits (58), Expect = 6.2
Identities = 16/61 (26%), Positives = 29/61 (47%)
Frame = +2
Query: 230 KEIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGVNQVSPKVRK 409
KEI ++ + V E IK +D + R+ +RG Y V++I Q+ + R+
Sbjct: 295 KEIVRKIKMLVTEPEIKPQDGFKYRREEFDRGWYDCLKSLSSLEVLKIFAFTQLEDRSRE 354
Query: 410 V 412
+
Sbjct: 355 I 355
>At3g26780.1 68416.m03350 phosphoglycerate/bisphosphoglycerate
mutase family protein similar to X4 protein GI:21386798,
Y4 protein GI:21386800 from [Silene dioica]; contains
Pfam profiles PF00300: phosphoglycerate mutase family,
PF01535: PPR repeat
Length = 1053
Score = 27.5 bits (58), Expect = 6.2
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = -2
Query: 154 TVLQD*FRNSWQLLTVLFTLHRFFLGRSLLFCS 56
TVLQ +RN WQ+ + T H L + LFCS
Sbjct: 375 TVLQHSWRNGWQIKRMNDTAH-LRLFKKALFCS 406
>At3g09120.1 68416.m01073 hypothetical protein contains Pfam profile
PF05056: Protein of unknown function (DUF674)
Length = 333
Score = 27.1 bits (57), Expect = 8.2
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = -2
Query: 319 VTSLSCQSDFITLLDAVFFDILFGSLKDFFPLLNGSGTPLECDLK 185
V +SC+S FI D ++ S+ + +LNG G P DLK
Sbjct: 137 VVFVSCRSSFILTDD---LKVMLNSIDEIVKVLNGLGYPNINDLK 178
>At2g18540.1 68415.m02160 cupin family protein contains Pfam profile
PF00190: Cupin
Length = 707
Score = 27.1 bits (57), Expect = 8.2
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 5/46 (10%)
Frame = +2
Query: 200 KRRSASIKKRKEIFKRAEQYVK----EYRIKERDEI-RLARQARNR 322
KRR +KR+E KR E+ K E + KER+E+ R R+ + R
Sbjct: 556 KRREEEARKREEERKREEEMAKRREQERQRKEREEVERKIREEQER 601
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,686,292
Number of Sequences: 28952
Number of extensions: 224434
Number of successful extensions: 537
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 526
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 537
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1023490624
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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