Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_F20
         (476 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29B5.04c |||conserved fungal protein|Schizosaccharomyces pom...    33   0.030
SPAC3G9.14 |sak1||transcriptional repressor Sak1|Schizosaccharom...    26   2.6  
SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|ch...    26   3.4  
SPAC139.03 |||transcription factor, zf-fungal binuclear cluster ...    25   4.5  
SPBC405.06 |||DNAJ protein Xdj1 |Schizosaccharomyces pombe|chr 2...    25   5.9  
SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyc...    25   5.9  

>SPBC29B5.04c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 605

 Score = 32.7 bits (71), Expect = 0.030
 Identities = 22/64 (34%), Positives = 34/64 (53%)
 Frame = +3

Query: 273 EDTNIRKATDMKIILTQFVDGIGKSGDIITLHPNKAYNDFLLPGLAVYATPENLETFKVD 452
           E+TN++   D K  L   V+  GK  DI     +K  ND   P L+++ TP++L+   V+
Sbjct: 95  ENTNLQVVVDTKAQLNVNVND-GKPNDIELSSTSKTEND---PPLSLHTTPDDLQGNGVN 150

Query: 453 ESNP 464
             NP
Sbjct: 151 VPNP 154


>SPAC3G9.14 |sak1||transcriptional repressor
           Sak1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 766

 Score = 26.2 bits (55), Expect = 2.6
 Identities = 21/80 (26%), Positives = 28/80 (35%), Gaps = 2/80 (2%)
 Frame = +3

Query: 165 QTRNTFILKRRWPPPLHKRGGKVPKMKGRHFVYDLVEDTNIRKATDMKIILTQFVDGI-- 338
           Q   +F   +  P P H     VP       V       ++ + T     + QF      
Sbjct: 263 QLAPSFAAPQAHPLPSHLSQSNVPPQLSHSSVPSPAPPRSVSQPTYFSQPMPQFSSSFVP 322

Query: 339 GKSGDIITLHPNKAYNDFLL 398
           G S  + TLHP  A  DF L
Sbjct: 323 GTSSIVPTLHPASAQEDFNL 342


>SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 701

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 16/68 (23%), Positives = 33/68 (48%)
 Frame = -1

Query: 359 DDISTFANTINKLSQDNFHICCLSNICVFNKIIYKMPALHLGNFATPFVEWWWPSSFQDK 180
           +D+ TF    ++L   +  I  LS+   +++++  +   HL     PFV     SS + +
Sbjct: 36  NDLKTFKALRSQLCLSHPSINSLSSFQTYHQLLCVLEQKHLSECVAPFVWTLSSSSNERE 95

Query: 179 CVPSLLFK 156
              +L+F+
Sbjct: 96  SFENLIFE 103


>SPAC139.03 |||transcription factor, zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 625

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = -2

Query: 313 IIFISVAFL-IFVSSTRSYTKCLPFILGTLPP 221
           +I     F+ I    +R+Y+KCL  +LG + P
Sbjct: 389 VIISEATFVNIITKVSRAYSKCLKVLLGIIAP 420


>SPBC405.06 |||DNAJ protein Xdj1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 413

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 9/33 (27%), Positives = 18/33 (54%)
 Frame = +3

Query: 207 PLHKRGGKVPKMKGRHFVYDLVEDTNIRKATDM 305
           P+H++     + +G    YD+++D   R+  DM
Sbjct: 39  PIHEKEEAAERFRGVQEAYDILKDPESREMYDM 71


>SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 791

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -1

Query: 275 FNKIIYKMPALHLGNFATP 219
           F KI +  P+LHLG F+TP
Sbjct: 397 FRKITH--PSLHLGKFSTP 413


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,066,076
Number of Sequences: 5004
Number of extensions: 45416
Number of successful extensions: 100
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 184476110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)