Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_F20
         (476 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0149 - 1175689-1176258,1176345-1176509,1176631-1177539,117...    36   0.013
02_05_1266 - 35339279-35339332,35339426-35339519,35339622-353396...    35   0.030
11_06_0557 - 24955837-24956214,24957225-24957395,24957576-249576...    29   1.5  
05_06_0159 + 26069833-26069955,26070382-26070516,26070919-260709...    29   1.5  
03_06_0367 - 33413530-33413710,33414347-33414681,33414908-334150...    29   1.9  
07_01_0743 + 5678086-5678098,5678436-5678560,5678666-5678800,567...    28   3.4  

>03_01_0149 - 1175689-1176258,1176345-1176509,1176631-1177539,
            1178179-1178378,1178505-1178605,1178747-1179369,
            1179451-1179546,1179637-1179798,1179889-1180068,
            1180173-1180323,1180408-1180641,1180753-1180913,
            1181041-1181163,1181261-1181421,1181655-1181877,
            1181952-1182346,1182461-1182671,1183536-1184522
          Length = 1883

 Score = 36.3 bits (80), Expect = 0.013
 Identities = 17/54 (31%), Positives = 29/54 (53%)
 Frame = +3

Query: 141  SGPSLFEQQTRNTFILKRRWPPPLHKRGGKVPKMKGRHFVYDLVEDTNIRKATD 302
            +G  +F +QT N   L+R+WP P ++   +      + FVY +  +T+ R  TD
Sbjct: 1792 NGAQMFTRQTLNDICLRRQWPMPQYRCVNEGGPAHAKRFVYSVRVNTSDRGWTD 1845


>02_05_1266 -
           35339279-35339332,35339426-35339519,35339622-35339669,
           35339739-35339851,35340121-35340166,35340517-35340644,
           35341312-35341434
          Length = 201

 Score = 35.1 bits (77), Expect = 0.030
 Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
 Frame = +3

Query: 306 KIILTQFVDGIGKSGDIITLHPNKAYNDFLLP-GLAVYATPENLETFKVDE 455
           ++ILT  +  +GK GD + +     Y +FLLP G A   TPE L+  +V++
Sbjct: 41  QVILTDDIAEVGKKGDTLKVRAG-FYRNFLLPKGKATLLTPEVLKEMQVEQ 90


>11_06_0557 -
           24955837-24956214,24957225-24957395,24957576-24957635,
           24958419-24958623,24958710-24958953,24959103-24959394,
           24959734-24960828,24960915-24961409,24961665-24961823,
           24961893-24962387
          Length = 1197

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
 Frame = -2

Query: 187 KINVFLVC-CSNKLGPLVTALLMKEHTRNIFLNAKINSLTKMF*ELY 50
           ++NV +VC CSN++  ++T L  K    +  +N ++NSL  M  + Y
Sbjct: 853 RLNVGIVCFCSNQVNAIITQLGRKYQNHDR-VNLEVNSLENMHEDWY 898


>05_06_0159 +
           26069833-26069955,26070382-26070516,26070919-26070981,
           26071732-26071794,26071949-26072020,26072095-26072238,
           26072583-26072797,26073016-26073145
          Length = 314

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = +3

Query: 303 MKIILTQFVDGIGKSGDIITLHPNKAYNDFLLPGLAV 413
           +++ILT  +D +GK+G+++ + P    N  +   LAV
Sbjct: 35  LEVILTTTIDKLGKAGEVVKVAPGHFRNHLMPKMLAV 71


>03_06_0367 -
           33413530-33413710,33414347-33414681,33414908-33415023,
           33415107-33415235,33415657-33415723,33415780-33415854,
           33416054-33416149,33416404-33416592
          Length = 395

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
 Frame = -2

Query: 274 STRSYTKCLPFILGTLPPLLWSGGGHLLFKINVFLVCCSNKLGPLVTALLMKEHT---RN 104
           S  S    +PF  G LP L WSG   L  ++ + +  C + LG  V  L + +     R 
Sbjct: 75  SVLSCVVSVPFYTGFLPLLFWSGHSKLARQMTLLMAFC-DYLGNSVKLLTLWKSVDTGRG 133

Query: 103 IFLNAKINS 77
           +  +AK++S
Sbjct: 134 VSPSAKLSS 142


>07_01_0743 +
           5678086-5678098,5678436-5678560,5678666-5678800,
           5679128-5679200,5679581-5679654,5680292-5680396,
           5680637-5680881,5680965-5681052,5681202-5681244,
           5681319-5681475,5681648-5681776,5682012-5682084,
           5682281-5682445,5682530-5682544,5682651-5682780,
           5684517-5684651,5684880-5684945,5685088-5685170,
           5685503-5685549,5685736-5685814,5685914-5686006
          Length = 690

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 5/57 (8%)
 Frame = -2

Query: 247 PFILGTLPPLLWSGGGHLLFKINVFLVCCSN--KLGPLVTA---LLMKEHTRNIFLN 92
           PFI G +   +   G H+   ++VF  C SN  +L   V A   LL+KEHT + F+N
Sbjct: 54  PFIGGKVGSFVDRKGNHIEMGLHVFFGCYSNLFRLMKKVGADNNLLVKEHT-HTFVN 109


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,661,012
Number of Sequences: 37544
Number of extensions: 264401
Number of successful extensions: 679
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 658
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 679
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 979080328
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)