Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_F20
         (476 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27932| Best HMM Match : Ribosomal_L9_N (HMM E-Value=1.4e-13)        44   5e-05
SB_58212| Best HMM Match : 7tm_1 (HMM E-Value=1.7e-38)                 33   0.16 
SB_30614| Best HMM Match : DUF1265 (HMM E-Value=3.9)                   30   0.85 
SB_16594| Best HMM Match : DUF1265 (HMM E-Value=2.6)                   30   1.1  
SB_55749| Best HMM Match : SRCR (HMM E-Value=0)                        29   1.5  
SB_13498| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.5  
SB_5721| Best HMM Match : DUF1644 (HMM E-Value=5.8)                    29   1.5  
SB_24517| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.0  
SB_44949| Best HMM Match : LIM (HMM E-Value=0.44)                      29   2.0  
SB_32075| Best HMM Match : LIM (HMM E-Value=0.44)                      29   2.0  
SB_26558| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.0  
SB_51435| Best HMM Match : Hydrolase (HMM E-Value=5.6)                 28   3.4  
SB_8787| Best HMM Match : Hydrolase (HMM E-Value=5.6)                  28   3.4  
SB_23457| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.5  
SB_31697| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.0  
SB_28042| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.0  
SB_26626| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.9  
SB_24924| Best HMM Match : WHEP-TRS (HMM E-Value=1.1)                  27   7.9  
SB_59786| Best HMM Match : F5_F8_type_C (HMM E-Value=1.7e-19)          27   7.9  
SB_45980| Best HMM Match : C1_3 (HMM E-Value=4.6)                      27   7.9  
SB_8850| Best HMM Match : LIM (HMM E-Value=0.51)                       27   7.9  

>SB_27932| Best HMM Match : Ribosomal_L9_N (HMM E-Value=1.4e-13)
          Length = 206

 Score = 44.4 bits (100), Expect = 5e-05
 Identities = 25/63 (39%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
 Frame = +3

Query: 291 KATDMKIILTQFVDGIGKSGDIITLHPNKAYNDFLLP-GLAVYATPENLETFKVDESNPR 467
           K     +IL + +DG+G SG ++ +    A N FL+P   AVYATPEN E F V   +  
Sbjct: 39  KKPKFSVILKEPMDGLGNSGQLVEVERGYARN-FLIPQAKAVYATPENKERFLVSSEDAA 97

Query: 468 TED 476
             D
Sbjct: 98  KTD 100


>SB_58212| Best HMM Match : 7tm_1 (HMM E-Value=1.7e-38)
          Length = 352

 Score = 32.7 bits (71), Expect = 0.16
 Identities = 17/53 (32%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
 Frame = -2

Query: 253 CLPFILGTLPPLLWSGGGH-LLFKINVFLVCCSNKLGPLVTALLMKEHTRNIF 98
           C+ FI   +  ++++ G H + +K++ FLV CS+ + PL+ A     + RN F
Sbjct: 248 CVCFIPFIVVSVVFTDGSHSVAYKLSYFLVYCSSSVNPLIYAYYSSNY-RNAF 299


>SB_30614| Best HMM Match : DUF1265 (HMM E-Value=3.9)
          Length = 327

 Score = 30.3 bits (65), Expect = 0.85
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = -2

Query: 169 VCCSNKLGPLVTALLMKEHTRNIFLNA 89
           VC +NKLG LV  LL++ H R    NA
Sbjct: 301 VCSTNKLGALVQQLLVEHHIRYAAANA 327


>SB_16594| Best HMM Match : DUF1265 (HMM E-Value=2.6)
          Length = 734

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -2

Query: 169 VCCSNKLGPLVTALLMKEHTRN 104
           VC +NK+GPLV   L++ H +N
Sbjct: 485 VCSTNKMGPLVQQRLVEHHRKN 506


>SB_55749| Best HMM Match : SRCR (HMM E-Value=0)
          Length = 1224

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +3

Query: 309 IILTQFVDGIGKSGDIITLHPNKAYNDFLL 398
           ++LT+   GIG+SGDI  + P  A +  L+
Sbjct: 109 LMLTRLSHGIGRSGDIAAIQPKAAGSSLLM 138


>SB_13498| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 220

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 6/57 (10%)
 Frame = -1

Query: 338 NTINKLSQDNFHICCLSNI-C-----VFNKIIYKMPALHLGNFATPFVEWWWPSSFQ 186
           +T+  L+ D     CLSN+ C     ++   IY  PAL +  + T F++ WW S  Q
Sbjct: 57  STLLHLAVDTGQTQCLSNVYCGLTLNMWPSNIYCAPALMIVYYFTKFIDIWWCSERQ 113


>SB_5721| Best HMM Match : DUF1644 (HMM E-Value=5.8)
          Length = 217

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -2

Query: 181 NVFLVCCSNKLGPLVTALLMKEHTRN 104
           N  LVC +NK+G LV   L++ H +N
Sbjct: 55  NDMLVCSTNKMGALVQQRLIEHHRKN 80


>SB_24517| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 325

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = +3

Query: 135 VTSGPSLFEQQTRNTFILKRRWPPPL-HKRGGKVPKMKGRHFVYDLVEDTNIRK 293
           + SG  L   Q+   F +KRRW   +  K   K    KG+HF+ D++     RK
Sbjct: 267 IMSGNPLLNPQSN--FKVKRRWDDDVVFKNCAKGEDEKGQHFINDMIRSDFHRK 318


>SB_44949| Best HMM Match : LIM (HMM E-Value=0.44)
          Length = 595

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -2

Query: 169 VCCSNKLGPLVTALLMKEHTRN 104
           VC +NK+G LV  LL++ H +N
Sbjct: 346 VCSTNKMGALVQQLLVEHHRKN 367


>SB_32075| Best HMM Match : LIM (HMM E-Value=0.44)
          Length = 789

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -2

Query: 169 VCCSNKLGPLVTALLMKEHTRN 104
           VC +NK+G LV  LL++ H +N
Sbjct: 523 VCSTNKMGALVQQLLVEHHRKN 544


>SB_26558| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 879

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -1

Query: 212 EWWWPSSFQDKCVPSLLFK*TWTTSNCFADERT 114
           EW+W S   D C    L+  T T  +  A +RT
Sbjct: 287 EWFWASIHMDGCADETLYTFTATLPDMMAQQRT 319


>SB_51435| Best HMM Match : Hydrolase (HMM E-Value=5.6)
          Length = 825

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -2

Query: 172 LVCCSNKLGPLVTALLMKEHTRN 104
           LVC +NK+G LV   L++ H +N
Sbjct: 750 LVCSTNKMGALVQQRLVEHHRKN 772


>SB_8787| Best HMM Match : Hydrolase (HMM E-Value=5.6)
          Length = 815

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -2

Query: 172 LVCCSNKLGPLVTALLMKEHTRN 104
           LVC +NK+G LV   L++ H +N
Sbjct: 750 LVCSTNKMGALVQQRLVEHHRKN 772


>SB_23457| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 437

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -2

Query: 181 NVFLVCCSNKLGPLVTALLMKEHTRN 104
           N   VC +NK+G LV   L++ H++N
Sbjct: 279 NDMWVCSTNKMGALVQQRLIERHSKN 304


>SB_31697| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 518

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = +3

Query: 132 AVTSGPSLFEQQTRNTFILKRRWPP-PLHKRGGK 230
           + ++ PS  + ++    + KR+WPP P  KRGG+
Sbjct: 479 SASTSPSGTKTKSPPPVMAKRQWPPPPKEKRGGR 512


>SB_28042| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 183

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -1

Query: 254 MPALHLGNFATPFVEWWWPSSFQDKCV 174
           + ALH G+ A   VEW +P  F+D  V
Sbjct: 82  LTALHEGSTALQDVEWAYPDKFKDVIV 108


>SB_26626| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 801

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -2

Query: 181 NVFLVCCSNKLGPLVTALLMKEHTRN 104
           N   VC +NK+G LV   L++ H +N
Sbjct: 606 NDMWVCSTNKMGDLVQQRLIEHHKKN 631


>SB_24924| Best HMM Match : WHEP-TRS (HMM E-Value=1.1)
          Length = 1002

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -2

Query: 181 NVFLVCCSNKLGPLVTALLMKEHTRN 104
           N   VC +NK+G LV   L++ H +N
Sbjct: 759 NDMWVCSTNKMGALVQQRLIEHHRKN 784


>SB_59786| Best HMM Match : F5_F8_type_C (HMM E-Value=1.7e-19)
          Length = 268

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +3

Query: 117 SFISKAVTSG-PSLFEQQTRNTFILKRRWPPPLHKRGGKV 233
           +++S A T G P +F   T NT ILK  + PP+  R  K+
Sbjct: 208 AWLSVADTHGSPKIFPGNTDNTGILKTTFSPPVIGRYFKI 247


>SB_45980| Best HMM Match : C1_3 (HMM E-Value=4.6)
          Length = 771

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -2

Query: 181 NVFLVCCSNKLGPLVTALLMKEHTRN 104
           N   VC +NK+G LV   L++ H +N
Sbjct: 77  NDMWVCSTNKMGALVQQRLIEHHRKN 102


>SB_8850| Best HMM Match : LIM (HMM E-Value=0.51)
          Length = 1039

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -2

Query: 181 NVFLVCCSNKLGPLVTALLMKEHTRN 104
           N   VC +NK+G LV   L++ H +N
Sbjct: 804 NDMWVCSTNKMGALVQQRLIEHHRKN 829


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,734,069
Number of Sequences: 59808
Number of extensions: 322581
Number of successful extensions: 822
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 800
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 821
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 989515521
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)