Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_F20
(476 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF067211-12|AAK66018.2| 276|Caenorhabditis elegans Hypothetical... 55 2e-08
Z81110-3|CAB03257.1| 323|Caenorhabditis elegans Hypothetical pr... 31 0.57
U58740-1|AAB00611.1| 1073|Caenorhabditis elegans Hypothetical pr... 27 5.3
AC024826-13|AAF60794.2| 305|Caenorhabditis elegans Serpentine r... 27 5.3
AC006693-7|AAF60385.1| 201|Caenorhabditis elegans Hypothetical ... 27 5.3
Z81086-7|CAB03118.2| 316|Caenorhabditis elegans Hypothetical pr... 27 7.0
Z71177-7|CAI46554.1| 351|Caenorhabditis elegans Hypothetical pr... 27 9.2
Z70037-4|CAA93877.1| 146|Caenorhabditis elegans Hypothetical pr... 27 9.2
AL032646-6|CAA21679.1| 238|Caenorhabditis elegans Hypothetical ... 27 9.2
>AF067211-12|AAK66018.2| 276|Caenorhabditis elegans Hypothetical
protein B0205.11 protein.
Length = 276
Score = 55.2 bits (127), Expect = 2e-08
Identities = 33/96 (34%), Positives = 54/96 (56%), Gaps = 2/96 (2%)
Frame = +3
Query: 162 QQTRNTFILKRRWPPPLHKRGG--KVPKMKGRHFVYDLVEDTNIRKATDMKIILTQFVDG 335
Q +RNT++L+R + P + GG K P + Y++VE + A + +IL Q V+G
Sbjct: 17 QASRNTWVLRRVFQPEVTPPGGVQKNPNDFHDYQKYEVVEFETQKSAGPINVILLQDVEG 76
Query: 336 IGKSGDIITLHPNKAYNDFLLPGLAVYATPENLETF 443
IG D++++ A D LL AVYA+P +L+ +
Sbjct: 77 IGHQFDVVSVDRTLARKDLLLSKKAVYASPFDLKYY 112
>Z81110-3|CAB03257.1| 323|Caenorhabditis elegans Hypothetical
protein T01D3.4 protein.
Length = 323
Score = 30.7 bits (66), Expect = 0.57
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 6/65 (9%)
Frame = -1
Query: 389 IIVCFIWMQCDDISTFANTINKLSQDNFHICCLSN------ICVFNKIIYKMPALHLGNF 228
I++CFI + + + F K ++ FH+ CLS IC+ + + + PA+ L N
Sbjct: 20 ILICFIGLFLNGLIFFKFACPKQLKNGFHVLCLSKSISNSIICIIS-LFWVGPAILLNNL 78
Query: 227 ATPFV 213
P +
Sbjct: 79 FLPLL 83
>U58740-1|AAB00611.1| 1073|Caenorhabditis elegans Hypothetical
protein R09H3.1 protein.
Length = 1073
Score = 27.5 bits (58), Expect = 5.3
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -3
Query: 282 LCLQQDHIQNACPSSWELCHPFC 214
LC+ +DH ++ P WE C FC
Sbjct: 860 LCVPKDHPNSSGPPQWECCR-FC 881
>AC024826-13|AAF60794.2| 305|Caenorhabditis elegans Serpentine
receptor, class x protein12 protein.
Length = 305
Score = 27.5 bits (58), Expect = 5.3
Identities = 12/20 (60%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
Frame = -3
Query: 240 SWELCHPFCGVVVAIF-FSR 184
+WELCH G+VV IF F+R
Sbjct: 261 AWELCHCLDGLVVVIFHFNR 280
>AC006693-7|AAF60385.1| 201|Caenorhabditis elegans Hypothetical
protein W02H5.2 protein.
Length = 201
Score = 27.5 bits (58), Expect = 5.3
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = +3
Query: 54 SSQNIFVKLF--ILAFKNMFRVCSFISKAVTSGPSLFEQQTRNTFI 185
SSQ F +F IL +++FR+ F+ + P +QT NT++
Sbjct: 6 SSQTTFYYMFSRILQNRSIFRIFGFVLMSDPFAPQANTRQTDNTYL 51
>Z81086-7|CAB03118.2| 316|Caenorhabditis elegans Hypothetical
protein F53B6.7 protein.
Length = 316
Score = 27.1 bits (57), Expect = 7.0
Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Frame = +3
Query: 186 LKRRWPPPLHKRGGKVPKMKGRHFVYDLVEDTNIRKATDMKIILTQ--FVDGIGKSGDII 359
L ++ PPL +RG V + GR + + + + DMK + T + G+G S I
Sbjct: 100 LHYKFDPPLTERGQIVSETYGRGLLNAGIRPFEVFCSPDMKSVQTAAFLIKGLGLSYTTI 159
Query: 360 TLHP 371
+ P
Sbjct: 160 NIDP 163
>Z71177-7|CAI46554.1| 351|Caenorhabditis elegans Hypothetical
protein AC3.10 protein.
Length = 351
Score = 26.6 bits (56), Expect = 9.2
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -1
Query: 74 NKDVLRTLYKYFIIYLIYVRF 12
N V YKYF++Y+IY F
Sbjct: 188 NMCVTHVNYKYFLLYIIYTSF 208
>Z70037-4|CAA93877.1| 146|Caenorhabditis elegans Hypothetical
protein T27D12.3 protein.
Length = 146
Score = 26.6 bits (56), Expect = 9.2
Identities = 9/26 (34%), Positives = 14/26 (53%)
Frame = -3
Query: 309 FSYLLPF*YLCLQQDHIQNACPSSWE 232
F +L+P C+ I+ CP+ WE
Sbjct: 6 FLFLIPVVTSCIPTQQIEMPCPTDWE 31
>AL032646-6|CAA21679.1| 238|Caenorhabditis elegans Hypothetical
protein Y54E2A.7 protein.
Length = 238
Score = 26.6 bits (56), Expect = 9.2
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Frame = -2
Query: 262 YTKCLPFILGTLPPLLWSGGGHLLFKINVFLV---CCSNKLGPLVTALLMKEHTR 107
Y+ + ++ +L LL +G G L+F + F + CS K P T+ K TR
Sbjct: 6 YSFAMQDVIQSLVRLLVNGNGILIFSVAAFALSATMCSKKKNPKSTSKGSKSTTR 60
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,301,040
Number of Sequences: 27780
Number of extensions: 252488
Number of successful extensions: 603
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 593
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 603
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 871571276
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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