Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_F20
         (476 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g44890.1 68416.m04836 50S ribosomal protein L9, chloroplast (...    36   0.019
At3g10310.1 68416.m01237 kinesin motor protein-related similar t...    30   0.70 
At3g53090.1 68416.m05851 HECT-domain-containing protein / ubiqui...    28   2.8  
At3g18500.1 68416.m02351 nocturnin-related contains weak similar...    28   2.8  
At3g58490.1 68416.m06519 phosphatidic acid phosphatase family pr...    28   3.8  
At1g01040.1 68414.m00004 DEAD/DEAH box helicase carpel factory /...    28   3.8  
At5g12230.1 68418.m01435 expressed protein                             27   8.7  

>At3g44890.1 68416.m04836 50S ribosomal protein L9, chloroplast
           (CL9) contains Pfam profile PF03948: Ribosomal protein
           L9, C-terminal domain; contains Pfam profile PF01281:
           ribosomal protein L9, N-terminal domain; contains
           TIGRfam profile TIGR00158: ribosomal protein L9
          Length = 197

 Score = 35.5 bits (78), Expect = 0.019
 Identities = 24/93 (25%), Positives = 43/93 (46%), Gaps = 1/93 (1%)
 Frame = +3

Query: 198 WPPPLHKRGGKVPKMKGRHFVYDLVEDTNIRKATDMKIILTQFVDGIGKSGDIITLHPNK 377
           W    +    +  K+  R F +++V     +K    K+IL + V  +GK G ++ +    
Sbjct: 17  WSHSFNGGANETLKVSERRFNFEVVSQKKAKKLR--KVILKEDVTDLGKQGQLLDVKAG- 73

Query: 378 AYNDFLLP-GLAVYATPENLETFKVDESNPRTE 473
            + +FLLP G A   TP  L+  K+++     E
Sbjct: 74  FFRNFLLPTGKAQLMTPLLLKELKMEDERIEAE 106


>At3g10310.1 68416.m01237 kinesin motor protein-related similar to
           carboxy-terminal kinesin 2 GB:P79955 [Xenopus laevis]
          Length = 897

 Score = 30.3 bits (65), Expect = 0.70
 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
 Frame = +3

Query: 258 VYDLVEDT--NIRKATDMKIILTQFVDG----IGKSGDIITLHPNKAYND 389
           +Y++V+D   NIR    ++ I    +DG    IGK G +  L P+K Y D
Sbjct: 328 LYNMVQDLKGNIRVYCRVRPIFNSEMDGVIDYIGKDGSLFVLDPSKPYKD 377


>At3g53090.1 68416.m05851 HECT-domain-containing protein /
           ubiquitin-transferase family protein / IQ
           calmodulin-binding motif-containing protein contains
           Pfam profiles PF00632: HECT-domain
           (ubiquitin-transferase), PF00612: IQ calmodulin-binding
           motif
          Length = 1142

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 12/49 (24%), Positives = 23/49 (46%)
 Frame = -1

Query: 341 ANTINKLSQDNFHICCLSNICVFNKIIYKMPALHLGNFATPFVEWWWPS 195
           + T+  L     + C L   CV N ++  +P L++ +F   ++   W S
Sbjct: 462 SETLGLLDIARLYSCMLRIFCVMNPVLGPLPVLNMLSFCPGYIVSLWNS 510


>At3g18500.1 68416.m02351 nocturnin-related contains weak similarity
           to Nocturnin (CCR4 protein homolog) (Swiss-Prot:O35710)
           [Mus musculus]
          Length = 262

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = +3

Query: 87  LAFKNMFRVCSFISKAVTSGPSLFEQQTRNTFILKRRWPPPLHKR 221
           L+F++ F  CS    + TSGPS    ++ +     RRW  PL +R
Sbjct: 39  LSFRSSFVCCS----SSTSGPSDSNPESSSNRSYSRRWQNPLPRR 79


>At3g58490.1 68416.m06519 phosphatidic acid phosphatase family
           protein / PAP2 family protein similar to
           sphingosine-1-phosphate phosphohydrolase from [Mus
           musculus] GI:9623190, [Homo sapiens] GI:23345324;
           contains Pfam profile PF01569: PAP2 superfamily
          Length = 416

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -2

Query: 250 LPFILGTLPPLLWSGGGHLLFKINVFLVCC 161
           +PF    LP L WSG G L  ++ + +  C
Sbjct: 82  VPFYTAFLPLLFWSGHGRLARQMTLLIAFC 111


>At1g01040.1 68414.m00004 DEAD/DEAH box helicase carpel factory / CAF
            identical to RNA helicase/RNAseIII CAF protein
            GB:AAF03534 GI:6102610 from [Arabidopsis thaliana]
          Length = 1909

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 14/54 (25%), Positives = 26/54 (48%)
 Frame = +3

Query: 141  SGPSLFEQQTRNTFILKRRWPPPLHKRGGKVPKMKGRHFVYDLVEDTNIRKATD 302
            +G   F +QT N   L++ WP P ++   +      + F + +  +T+ R  TD
Sbjct: 1826 NGHQPFTRQTLNDICLRKNWPMPSYRCVKEGGPAHAKRFTFGVRVNTSDRGWTD 1879


>At5g12230.1 68418.m01435 expressed protein 
          Length = 221

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = +3

Query: 252 HFVYDLVEDTNIRKATDMKIILTQFVDGIGKS 347
           H+++++V DT IRK   M+  L Q ++ I +S
Sbjct: 46  HYLHNVVGDTEIRKGEGMQ--LDQLIESISQS 75


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,492,209
Number of Sequences: 28952
Number of extensions: 225676
Number of successful extensions: 565
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 551
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 565
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 821630280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)